Hb_000477_060

Information

Type -
Description -
Location Contig477: 88149-95046
Sequence    

Annotation

kegg
ID rcu:RCOM_0826280
description serine-threonine kinase receptor-associated protein, putative
nr
ID XP_012078706.1
description PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
swissprot
ID Q54LT8
description Serine-threonine kinase receptor-associated protein OS=Dictyostelium discoideum GN=strap PE=3 SV=1
trembl
ID A0A067KKK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13274 PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine-threonine kinase receptor-associated

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44520: 88143-95117
cDNA
(Sanger)
(ID:Location)		 036_C14.ab1: 88143-93539

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000477_060 0.0 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
2 Hb_003697_040 0.0401783371 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
3 Hb_003605_090 0.0496589011 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
4 Hb_000363_360 0.0597642185 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
5 Hb_000116_270 0.0662028026 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
6 Hb_004934_100 0.0663225164 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000749_220 0.0694617865 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
8 Hb_000703_350 0.0707239489 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
9 Hb_000172_290 0.0742111876 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
10 Hb_006420_080 0.0748475723 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_002481_080 0.0750385854 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
12 Hb_003125_010 0.075057286 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
13 Hb_015934_070 0.0754212762 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
14 Hb_003177_030 0.0759931276 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
15 Hb_008453_030 0.0760674079 - - Thioredoxin superfamily protein [Theobroma cacao]
16 Hb_089032_030 0.0760857672 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
17 Hb_000599_250 0.076323848 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
18 Hb_001369_690 0.0763471515 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
19 Hb_001159_130 0.0774724933 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
20 Hb_002620_020 0.0778327898 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000477_060 Hb_000477_060 Hb_003697_040 Hb_003697_040 Hb_000477_060--Hb_003697_040 Hb_003605_090 Hb_003605_090 Hb_000477_060--Hb_003605_090 Hb_000363_360 Hb_000363_360 Hb_000477_060--Hb_000363_360 Hb_000116_270 Hb_000116_270 Hb_000477_060--Hb_000116_270 Hb_004934_100 Hb_004934_100 Hb_000477_060--Hb_004934_100 Hb_000749_220 Hb_000749_220 Hb_000477_060--Hb_000749_220 Hb_003697_040--Hb_003605_090 Hb_003053_020 Hb_003053_020 Hb_003697_040--Hb_003053_020 Hb_003697_040--Hb_004934_100 Hb_004889_010 Hb_004889_010 Hb_003697_040--Hb_004889_010 Hb_000783_020 Hb_000783_020 Hb_003697_040--Hb_000783_020 Hb_000703_350 Hb_000703_350 Hb_003605_090--Hb_000703_350 Hb_009615_070 Hb_009615_070 Hb_003605_090--Hb_009615_070 Hb_003605_090--Hb_004934_100 Hb_001252_130 Hb_001252_130 Hb_003605_090--Hb_001252_130 Hb_000985_060 Hb_000985_060 Hb_000363_360--Hb_000985_060 Hb_000363_360--Hb_003697_040 Hb_000479_190 Hb_000479_190 Hb_000363_360--Hb_000479_190 Hb_000221_160 Hb_000221_160 Hb_000363_360--Hb_000221_160 Hb_000336_240 Hb_000336_240 Hb_000363_360--Hb_000336_240 Hb_001159_130 Hb_001159_130 Hb_000116_270--Hb_001159_130 Hb_001016_120 Hb_001016_120 Hb_000116_270--Hb_001016_120 Hb_000200_020 Hb_000200_020 Hb_000116_270--Hb_000200_020 Hb_084646_010 Hb_084646_010 Hb_000116_270--Hb_084646_010 Hb_006478_020 Hb_006478_020 Hb_000116_270--Hb_006478_020 Hb_000599_250 Hb_000599_250 Hb_004934_100--Hb_000599_250 Hb_008453_030 Hb_008453_030 Hb_004934_100--Hb_008453_030 Hb_001489_080 Hb_001489_080 Hb_004934_100--Hb_001489_080 Hb_000421_220 Hb_000421_220 Hb_004934_100--Hb_000421_220 Hb_000985_030 Hb_000985_030 Hb_004934_100--Hb_000985_030 Hb_003177_030 Hb_003177_030 Hb_000749_220--Hb_003177_030 Hb_000172_290 Hb_000172_290 Hb_000749_220--Hb_000172_290 Hb_000003_250 Hb_000003_250 Hb_000749_220--Hb_000003_250 Hb_005490_030 Hb_005490_030 Hb_000749_220--Hb_005490_030 Hb_000749_220--Hb_001159_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.2097 12.0153 11.1608 25.5347 14.8107 21.8017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.8653 30.7137 30.952 20.5792 17.3068

CAGE analysis