Hb_000477_070

Information

Type -
Description -
Location Contig477: 98712-101392
Sequence    

Annotation

kegg
ID rcu:RCOM_0826270
description histone h2a, putative
nr
ID XP_002529367.1
description histone h2a, putative [Ricinus communis]
swissprot
ID Q9C944
description Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1
trembl
ID B9STP8
description Histone H2A OS=Ricinus communis GN=RCOM_0826270 PE=3 SV=1
Gene Ontology
ID GO:0000786
description probable histone h2a variant 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44521: 98741-101331 , PASA_asmbl_44523: 99928-100402
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000477_070 0.0 - - histone h2a, putative [Ricinus communis]
2 Hb_011188_010 0.0764617984 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
3 Hb_002259_220 0.0931516505 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
4 Hb_027043_010 0.0943830675 - - PREDICTED: glycerophosphodiester phosphodiesterase GDPD4 [Jatropha curcas]
5 Hb_002686_410 0.096960292 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
6 Hb_007290_070 0.0969850351 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
7 Hb_002809_160 0.1008626807 - - PREDICTED: protein FAM63A [Jatropha curcas]
8 Hb_009078_020 0.1009760457 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
9 Hb_004577_010 0.1029331619 - - PREDICTED: transmembrane protein 45A [Prunus mume]
10 Hb_002849_050 0.1040166986 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
11 Hb_000300_560 0.1041984661 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
12 Hb_001499_070 0.1064111348 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
13 Hb_000270_700 0.1084196347 - - PREDICTED: protease Do-like 9 [Populus euphratica]
14 Hb_001001_090 0.108422657 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
15 Hb_001408_020 0.1091001181 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
16 Hb_001663_130 0.1109789776 - - acyl-CoA thioesterase, putative [Ricinus communis]
17 Hb_006794_020 0.1109999378 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
18 Hb_000649_330 0.111817181 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
19 Hb_000453_230 0.1132375835 - - PREDICTED: NO-associated protein 1, chloroplastic/mitochondrial [Jatropha curcas]
20 Hb_005885_030 0.1140362198 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000477_070 Hb_000477_070 Hb_011188_010 Hb_011188_010 Hb_000477_070--Hb_011188_010 Hb_002259_220 Hb_002259_220 Hb_000477_070--Hb_002259_220 Hb_027043_010 Hb_027043_010 Hb_000477_070--Hb_027043_010 Hb_002686_410 Hb_002686_410 Hb_000477_070--Hb_002686_410 Hb_007290_070 Hb_007290_070 Hb_000477_070--Hb_007290_070 Hb_002809_160 Hb_002809_160 Hb_000477_070--Hb_002809_160 Hb_009078_020 Hb_009078_020 Hb_011188_010--Hb_009078_020 Hb_001059_060 Hb_001059_060 Hb_011188_010--Hb_001059_060 Hb_000300_560 Hb_000300_560 Hb_011188_010--Hb_000300_560 Hb_000594_060 Hb_000594_060 Hb_011188_010--Hb_000594_060 Hb_004577_010 Hb_004577_010 Hb_011188_010--Hb_004577_010 Hb_004052_110 Hb_004052_110 Hb_002259_220--Hb_004052_110 Hb_001514_240 Hb_001514_240 Hb_002259_220--Hb_001514_240 Hb_002259_220--Hb_011188_010 Hb_002259_220--Hb_009078_020 Hb_002259_220--Hb_001059_060 Hb_002849_050 Hb_002849_050 Hb_027043_010--Hb_002849_050 Hb_000649_330 Hb_000649_330 Hb_027043_010--Hb_000649_330 Hb_052135_020 Hb_052135_020 Hb_027043_010--Hb_052135_020 Hb_027043_010--Hb_002259_220 Hb_000015_150 Hb_000015_150 Hb_027043_010--Hb_000015_150 Hb_009178_010 Hb_009178_010 Hb_002686_410--Hb_009178_010 Hb_005885_030 Hb_005885_030 Hb_002686_410--Hb_005885_030 Hb_000270_700 Hb_000270_700 Hb_002686_410--Hb_000270_700 Hb_000034_110 Hb_000034_110 Hb_002686_410--Hb_000034_110 Hb_009158_060 Hb_009158_060 Hb_002686_410--Hb_009158_060 Hb_000030_140 Hb_000030_140 Hb_002686_410--Hb_000030_140 Hb_001499_070 Hb_001499_070 Hb_007290_070--Hb_001499_070 Hb_001408_020 Hb_001408_020 Hb_007290_070--Hb_001408_020 Hb_083078_010 Hb_083078_010 Hb_007290_070--Hb_083078_010 Hb_005214_070 Hb_005214_070 Hb_007290_070--Hb_005214_070 Hb_187005_010 Hb_187005_010 Hb_007290_070--Hb_187005_010 Hb_143629_020 Hb_143629_020 Hb_002809_160--Hb_143629_020 Hb_001414_010 Hb_001414_010 Hb_002809_160--Hb_001414_010 Hb_029552_020 Hb_029552_020 Hb_002809_160--Hb_029552_020 Hb_005305_130 Hb_005305_130 Hb_002809_160--Hb_005305_130 Hb_002809_160--Hb_009078_020 Hb_000172_360 Hb_000172_360 Hb_002809_160--Hb_000172_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6334 54.5448 76.3314 37.1519 11.5688 17.7082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.16085 6.71746 9.70094 37.8328 50.1812

CAGE analysis