Hb_000477_080

Information

Type -
Description -
Location Contig477: 104029-106464
Sequence    

Annotation

kegg
ID cit:102609752
description 3-ketoacyl-CoA synthase 11-like
nr
ID XP_012078704.1
description PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
swissprot
ID O48780
description 3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=2 SV=1
trembl
ID A0A067K8C1
description 3-ketoacyl-CoA synthase OS=Jatropha curcas GN=JCGZ_13272 PE=3 SV=1
Gene Ontology
ID GO:0016020
description 3-ketoacyl- synthase 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44524: 104160-106829 , PASA_asmbl_44525: 104071-105919
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000477_080 0.0 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
2 Hb_011360_080 0.1123212306 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
3 Hb_000141_030 0.1530034443 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
4 Hb_000368_060 0.1592225783 - - thioredoxin H-type 6 [Hevea brasiliensis]
5 Hb_004429_070 0.1597346506 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
6 Hb_000562_040 0.1659128539 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
7 Hb_000103_110 0.1678410921 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
8 Hb_002756_020 0.1769366653 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
9 Hb_004324_050 0.1830234146 - - PREDICTED: spermine synthase [Jatropha curcas]
10 Hb_000963_140 0.1863573025 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_000161_150 0.1887086684 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
12 Hb_002290_040 0.1889705221 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001277_090 0.1929346529 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
14 Hb_003599_070 0.1930677847 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_023732_040 0.1948056205 - - cytochrome P450, putative [Ricinus communis]
16 Hb_000327_220 0.1948111348 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
17 Hb_000972_010 0.195199889 - - PREDICTED: kinesin KP1 [Jatropha curcas]
18 Hb_000172_570 0.1982261015 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
19 Hb_000749_250 0.1994120604 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
20 Hb_000094_130 0.2006181335 - - PREDICTED: random slug protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000477_080 Hb_000477_080 Hb_011360_080 Hb_011360_080 Hb_000477_080--Hb_011360_080 Hb_000141_030 Hb_000141_030 Hb_000477_080--Hb_000141_030 Hb_000368_060 Hb_000368_060 Hb_000477_080--Hb_000368_060 Hb_004429_070 Hb_004429_070 Hb_000477_080--Hb_004429_070 Hb_000562_040 Hb_000562_040 Hb_000477_080--Hb_000562_040 Hb_000103_110 Hb_000103_110 Hb_000477_080--Hb_000103_110 Hb_011360_080--Hb_004429_070 Hb_002290_040 Hb_002290_040 Hb_011360_080--Hb_002290_040 Hb_011360_080--Hb_000368_060 Hb_011360_080--Hb_000141_030 Hb_002756_020 Hb_002756_020 Hb_011360_080--Hb_002756_020 Hb_000963_140 Hb_000963_140 Hb_000141_030--Hb_000963_140 Hb_010931_050 Hb_010931_050 Hb_000141_030--Hb_010931_050 Hb_000141_030--Hb_004429_070 Hb_004324_050 Hb_004324_050 Hb_000141_030--Hb_004324_050 Hb_000141_030--Hb_000368_060 Hb_000368_060--Hb_000562_040 Hb_005539_240 Hb_005539_240 Hb_000368_060--Hb_005539_240 Hb_000784_030 Hb_000784_030 Hb_000368_060--Hb_000784_030 Hb_000368_060--Hb_000103_110 Hb_003581_260 Hb_003581_260 Hb_000368_060--Hb_003581_260 Hb_004429_070--Hb_002756_020 Hb_004429_070--Hb_002290_040 Hb_004429_070--Hb_004324_050 Hb_000327_220 Hb_000327_220 Hb_004429_070--Hb_000327_220 Hb_000562_040--Hb_000784_030 Hb_000562_040--Hb_003581_260 Hb_001135_210 Hb_001135_210 Hb_000562_040--Hb_001135_210 Hb_024714_060 Hb_024714_060 Hb_000562_040--Hb_024714_060 Hb_005614_050 Hb_005614_050 Hb_000562_040--Hb_005614_050 Hb_000103_110--Hb_004324_050 Hb_000103_110--Hb_000562_040 Hb_000103_110--Hb_000784_030 Hb_000103_110--Hb_000141_030 Hb_000157_040 Hb_000157_040 Hb_000103_110--Hb_000157_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.7334 18.8712 6.97888 42.3662 70.346 15.481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
169.668 115.408 462.54 34.3134 14.7747

CAGE analysis