Hb_000477_090

Information

Type -
Description -
Location Contig477: 141446-144188
Sequence    

Annotation

kegg
ID rcu:RCOM_0826240
description protein with unknown function
nr
ID XP_012078703.1
description PREDICTED: uncharacterized protein LOC105639302 [Jatropha curcas]
swissprot
ID Q9SR77
description Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana GN=At3g10130 PE=2 SV=1
trembl
ID A0A067K7Y8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13271 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44526: 140500-144233 , PASA_asmbl_44529: 141527-144136
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000477_090 0.0 - - PREDICTED: uncharacterized protein LOC105639302 [Jatropha curcas]
2 Hb_005539_150 0.0730682431 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 33 [Jatropha curcas]
3 Hb_008195_090 0.0839289149 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001894_100 0.0889657294 - - PREDICTED: kininogen-1-like [Jatropha curcas]
5 Hb_033681_030 0.0899013101 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
6 Hb_029386_010 0.0899796132 - - RALF-LIKE 27 family protein [Populus trichocarpa]
7 Hb_003358_030 0.0914790834 - - ankyrin-kinase, putative [Ricinus communis]
8 Hb_002805_280 0.093380442 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
9 Hb_000670_070 0.0940022889 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
10 Hb_002073_130 0.094136656 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
11 Hb_008253_050 0.099548855 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
12 Hb_000654_020 0.1017805925 - - hypothetical protein CICLE_v10006262mg [Citrus clementina]
13 Hb_000608_190 0.1055027832 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
14 Hb_001790_060 0.106428028 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
15 Hb_020956_030 0.1071851417 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
16 Hb_002387_010 0.1101518895 - - PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Jatropha curcas]
17 Hb_004052_030 0.1101543932 - - PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]
18 Hb_003090_240 0.1109533294 - - hypothetical protein JCGZ_25095 [Jatropha curcas]
19 Hb_000139_360 0.1121003782 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
20 Hb_002042_210 0.1124573432 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000477_090 Hb_000477_090 Hb_005539_150 Hb_005539_150 Hb_000477_090--Hb_005539_150 Hb_008195_090 Hb_008195_090 Hb_000477_090--Hb_008195_090 Hb_001894_100 Hb_001894_100 Hb_000477_090--Hb_001894_100 Hb_033681_030 Hb_033681_030 Hb_000477_090--Hb_033681_030 Hb_029386_010 Hb_029386_010 Hb_000477_090--Hb_029386_010 Hb_003358_030 Hb_003358_030 Hb_000477_090--Hb_003358_030 Hb_000654_020 Hb_000654_020 Hb_005539_150--Hb_000654_020 Hb_005539_150--Hb_029386_010 Hb_002245_060 Hb_002245_060 Hb_005539_150--Hb_002245_060 Hb_008253_050 Hb_008253_050 Hb_005539_150--Hb_008253_050 Hb_000670_070 Hb_000670_070 Hb_005539_150--Hb_000670_070 Hb_002805_280 Hb_002805_280 Hb_008195_090--Hb_002805_280 Hb_003151_020 Hb_003151_020 Hb_008195_090--Hb_003151_020 Hb_004563_010 Hb_004563_010 Hb_008195_090--Hb_004563_010 Hb_029991_010 Hb_029991_010 Hb_008195_090--Hb_029991_010 Hb_002387_010 Hb_002387_010 Hb_008195_090--Hb_002387_010 Hb_008195_090--Hb_033681_030 Hb_001790_060 Hb_001790_060 Hb_001894_100--Hb_001790_060 Hb_005348_050 Hb_005348_050 Hb_001894_100--Hb_005348_050 Hb_001894_100--Hb_008253_050 Hb_000223_090 Hb_000223_090 Hb_001894_100--Hb_000223_090 Hb_133076_010 Hb_133076_010 Hb_001894_100--Hb_133076_010 Hb_001894_100--Hb_003151_020 Hb_002338_040 Hb_002338_040 Hb_033681_030--Hb_002338_040 Hb_086300_010 Hb_086300_010 Hb_033681_030--Hb_086300_010 Hb_020956_030 Hb_020956_030 Hb_033681_030--Hb_020956_030 Hb_005483_040 Hb_005483_040 Hb_033681_030--Hb_005483_040 Hb_029386_010--Hb_003358_030 Hb_000627_110 Hb_000627_110 Hb_029386_010--Hb_000627_110 Hb_029386_010--Hb_000223_090 Hb_004896_030 Hb_004896_030 Hb_029386_010--Hb_004896_030 Hb_000608_190 Hb_000608_190 Hb_003358_030--Hb_000608_190 Hb_004052_030 Hb_004052_030 Hb_003358_030--Hb_004052_030 Hb_001488_160 Hb_001488_160 Hb_003358_030--Hb_001488_160 Hb_007620_020 Hb_007620_020 Hb_003358_030--Hb_007620_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.374932 7.54678 14.1004 0 0.0463196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0691447 0.0543953 0.101835 1.41311 28.6792

CAGE analysis