Hb_000479_010

Information

Type -
Description -
Location Contig479: 19424-20948
Sequence    

Annotation

kegg
ID egr:104419418
description 40S ribosomal protein S19-3-like
nr
ID XP_010029379.1
description PREDICTED: 40S ribosomal protein S19-3-like [Eucalyptus grandis]
swissprot
ID Q9SGA6
description 40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1
trembl
ID A0A059ARF5
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02024 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s19-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44603: 19392-21546
cDNA
(Sanger)
(ID:Location)		 021_H07.ab1: 19540-21546 , 029_G18.ab1: 19541-21546

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_010 0.0 - - PREDICTED: 40S ribosomal protein S19-3-like [Eucalyptus grandis]
2 Hb_001140_060 0.0682136194 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
3 Hb_008300_010 0.0784063506 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
4 Hb_012753_160 0.0830910061 - - ara4-interacting protein, putative [Ricinus communis]
5 Hb_006031_020 0.0875575024 - - PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
6 Hb_011867_010 0.0879448967 - - PREDICTED: uncharacterized protein LOC105641409 [Jatropha curcas]
7 Hb_021409_030 0.089765459 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
8 Hb_138585_060 0.0908071546 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
9 Hb_000258_170 0.091731566 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
10 Hb_000072_080 0.0928079722 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
11 Hb_143766_050 0.0938645668 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
12 Hb_002874_190 0.0946186581 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
13 Hb_009486_130 0.0947378264 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
14 Hb_000608_370 0.095735566 - - acyl-carrier-protein [Triadica sebifera]
15 Hb_000377_060 0.0973140194 - - ARF GTPase activator, putative [Ricinus communis]
16 Hb_004375_140 0.0974593496 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
17 Hb_006117_070 0.0982963223 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
18 Hb_002864_050 0.098869675 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
19 Hb_003055_120 0.0989855425 - - Protein C20orf11, putative [Ricinus communis]
20 Hb_000431_010 0.0998016896 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]

Gene co-expression network

sample Hb_000479_010 Hb_000479_010 Hb_001140_060 Hb_001140_060 Hb_000479_010--Hb_001140_060 Hb_008300_010 Hb_008300_010 Hb_000479_010--Hb_008300_010 Hb_012753_160 Hb_012753_160 Hb_000479_010--Hb_012753_160 Hb_006031_020 Hb_006031_020 Hb_000479_010--Hb_006031_020 Hb_011867_010 Hb_011867_010 Hb_000479_010--Hb_011867_010 Hb_021409_030 Hb_021409_030 Hb_000479_010--Hb_021409_030 Hb_006117_070 Hb_006117_070 Hb_001140_060--Hb_006117_070 Hb_001140_060--Hb_012753_160 Hb_001140_060--Hb_008300_010 Hb_101705_030 Hb_101705_030 Hb_001140_060--Hb_101705_030 Hb_008878_030 Hb_008878_030 Hb_001140_060--Hb_008878_030 Hb_009486_130 Hb_009486_130 Hb_008300_010--Hb_009486_130 Hb_000431_010 Hb_000431_010 Hb_008300_010--Hb_000431_010 Hb_008300_010--Hb_006117_070 Hb_010174_020 Hb_010174_020 Hb_008300_010--Hb_010174_020 Hb_012675_060 Hb_012675_060 Hb_012753_160--Hb_012675_060 Hb_000072_080 Hb_000072_080 Hb_012753_160--Hb_000072_080 Hb_001998_050 Hb_001998_050 Hb_012753_160--Hb_001998_050 Hb_003455_040 Hb_003455_040 Hb_012753_160--Hb_003455_040 Hb_000574_480 Hb_000574_480 Hb_012753_160--Hb_000574_480 Hb_006031_020--Hb_011867_010 Hb_002226_070 Hb_002226_070 Hb_006031_020--Hb_002226_070 Hb_002183_090 Hb_002183_090 Hb_006031_020--Hb_002183_090 Hb_000059_370 Hb_000059_370 Hb_006031_020--Hb_000059_370 Hb_007416_030 Hb_007416_030 Hb_006031_020--Hb_007416_030 Hb_002686_020 Hb_002686_020 Hb_006031_020--Hb_002686_020 Hb_000069_110 Hb_000069_110 Hb_011867_010--Hb_000069_110 Hb_002609_020 Hb_002609_020 Hb_011867_010--Hb_002609_020 Hb_001703_030 Hb_001703_030 Hb_011867_010--Hb_001703_030 Hb_000270_270 Hb_000270_270 Hb_011867_010--Hb_000270_270 Hb_129204_030 Hb_129204_030 Hb_021409_030--Hb_129204_030 Hb_004375_140 Hb_004375_140 Hb_021409_030--Hb_004375_140 Hb_138585_060 Hb_138585_060 Hb_021409_030--Hb_138585_060 Hb_000608_370 Hb_000608_370 Hb_021409_030--Hb_000608_370 Hb_000240_090 Hb_000240_090 Hb_021409_030--Hb_000240_090 Hb_021409_030--Hb_012753_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
149.725 39.686 75.0862 76.1904 139.466 131.456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
123.34 307.234 257.596 71.0366 59.9039

CAGE analysis