Hb_000479_020

Information

Type -
Description -
Location Contig479: 22970-27083
Sequence    

Annotation

kegg
ID rcu:RCOM_0524800
description hypothetical protein
nr
ID XP_002526092.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4I2H7
description Protein TPX2 OS=Arabidopsis thaliana GN=TPX2 PE=1 SV=1
trembl
ID B9SJC3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0524800 PE=4 SV=1
Gene Ontology
ID GO:0005819
description tpx2 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44604: 22934-25570 , PASA_asmbl_44605: 25946-26102
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000742_180 0.1194613385 - - hypothetical protein POPTR_0011s16640g [Populus trichocarpa]
3 Hb_003109_010 0.133838113 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
4 Hb_007632_080 0.1361677115 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
5 Hb_012150_040 0.1397518104 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002965_160 0.141861009 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
7 Hb_000576_140 0.1445154957 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
8 Hb_003813_090 0.1506438681 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
9 Hb_011033_010 0.1564557024 - - ATP-binding cassette transporter, putative [Ricinus communis]
10 Hb_001862_050 0.1609887565 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
11 Hb_000120_930 0.1612031496 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
12 Hb_004129_060 0.1615797587 - - triacylglycerol lipase, putative [Ricinus communis]
13 Hb_000020_040 0.1653327964 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
14 Hb_012055_080 0.1665321864 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
15 Hb_033041_010 0.1685129925 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
16 Hb_016898_020 0.1708035041 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
17 Hb_000925_150 0.1715079941 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
18 Hb_002818_060 0.1723140507 - - zinc finger protein, putative [Ricinus communis]
19 Hb_101133_050 0.1725447586 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
20 Hb_004884_170 0.1736278086 - - hypothetical protein AALP_AA1G067000 [Arabis alpina]

Gene co-expression network

sample Hb_000479_020 Hb_000479_020 Hb_000742_180 Hb_000742_180 Hb_000479_020--Hb_000742_180 Hb_003109_010 Hb_003109_010 Hb_000479_020--Hb_003109_010 Hb_007632_080 Hb_007632_080 Hb_000479_020--Hb_007632_080 Hb_012150_040 Hb_012150_040 Hb_000479_020--Hb_012150_040 Hb_002965_160 Hb_002965_160 Hb_000479_020--Hb_002965_160 Hb_000576_140 Hb_000576_140 Hb_000479_020--Hb_000576_140 Hb_000742_180--Hb_000576_140 Hb_000742_180--Hb_012150_040 Hb_000742_180--Hb_007632_080 Hb_101133_050 Hb_101133_050 Hb_000742_180--Hb_101133_050 Hb_016898_020 Hb_016898_020 Hb_000742_180--Hb_016898_020 Hb_033041_010 Hb_033041_010 Hb_000742_180--Hb_033041_010 Hb_003109_010--Hb_033041_010 Hb_003109_010--Hb_007632_080 Hb_002232_310 Hb_002232_310 Hb_003109_010--Hb_002232_310 Hb_001584_360 Hb_001584_360 Hb_003109_010--Hb_001584_360 Hb_003109_010--Hb_101133_050 Hb_007943_180 Hb_007943_180 Hb_003109_010--Hb_007943_180 Hb_007632_080--Hb_033041_010 Hb_005183_150 Hb_005183_150 Hb_007632_080--Hb_005183_150 Hb_000028_530 Hb_000028_530 Hb_007632_080--Hb_000028_530 Hb_007632_080--Hb_101133_050 Hb_000334_120 Hb_000334_120 Hb_007632_080--Hb_000334_120 Hb_000317_120 Hb_000317_120 Hb_012150_040--Hb_000317_120 Hb_001377_370 Hb_001377_370 Hb_012150_040--Hb_001377_370 Hb_012150_040--Hb_101133_050 Hb_000661_150 Hb_000661_150 Hb_012150_040--Hb_000661_150 Hb_072201_010 Hb_072201_010 Hb_012150_040--Hb_072201_010 Hb_001862_050 Hb_001862_050 Hb_002965_160--Hb_001862_050 Hb_001123_310 Hb_001123_310 Hb_002965_160--Hb_001123_310 Hb_008511_040 Hb_008511_040 Hb_002965_160--Hb_008511_040 Hb_006133_020 Hb_006133_020 Hb_002965_160--Hb_006133_020 Hb_006289_020 Hb_006289_020 Hb_002965_160--Hb_006289_020 Hb_001188_050 Hb_001188_050 Hb_002965_160--Hb_001188_050 Hb_000576_140--Hb_000317_120 Hb_000830_010 Hb_000830_010 Hb_000576_140--Hb_000830_010 Hb_003106_090 Hb_003106_090 Hb_000576_140--Hb_003106_090 Hb_000576_140--Hb_016898_020 Hb_005276_190 Hb_005276_190 Hb_000576_140--Hb_005276_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.374009 0.347081 8.95312 5.98324 0.496553 0.264046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.334994 0.938938 1.44587

CAGE analysis