Hb_000479_070

Information

Type -
Description -
Location Contig479: 52531-56008
Sequence    

Annotation

kegg
ID rcu:RCOM_0524670
description ATP binding protein, putative
nr
ID XP_012084802.1
description PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
swissprot
ID Q9LDD4
description AT-rich interactive domain-containing protein 2 OS=Arabidopsis thaliana GN=ARID2 PE=2 SV=1
trembl
ID A0A067JTF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19920 PE=4 SV=1
Gene Ontology
ID GO:0003677
description at-rich interactive domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44607: 52533-56275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_070 0.0 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
2 Hb_001473_110 0.0420564204 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
3 Hb_001545_150 0.0446589186 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
4 Hb_003918_030 0.0486958127 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
5 Hb_031042_050 0.0600094623 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
6 Hb_001279_120 0.0627133612 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
7 Hb_001488_180 0.0674648078 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
8 Hb_000028_130 0.0704796857 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
9 Hb_000008_240 0.0706319923 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000024_040 0.0713444347 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
11 Hb_022425_060 0.0728492278 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
12 Hb_000025_280 0.0731330791 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
13 Hb_020805_150 0.0748870092 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_000069_470 0.0754497729 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
15 Hb_000703_200 0.075885327 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
16 Hb_143766_060 0.0769228368 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
17 Hb_000347_390 0.0770297162 - - PREDICTED: exportin-T [Jatropha curcas]
18 Hb_004899_040 0.0777651679 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
19 Hb_005551_020 0.0781747871 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
20 Hb_000347_400 0.0784995248 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000479_070 Hb_000479_070 Hb_001473_110 Hb_001473_110 Hb_000479_070--Hb_001473_110 Hb_001545_150 Hb_001545_150 Hb_000479_070--Hb_001545_150 Hb_003918_030 Hb_003918_030 Hb_000479_070--Hb_003918_030 Hb_031042_050 Hb_031042_050 Hb_000479_070--Hb_031042_050 Hb_001279_120 Hb_001279_120 Hb_000479_070--Hb_001279_120 Hb_001488_180 Hb_001488_180 Hb_000479_070--Hb_001488_180 Hb_000028_130 Hb_000028_130 Hb_001473_110--Hb_000028_130 Hb_001473_110--Hb_001488_180 Hb_001473_110--Hb_001545_150 Hb_000347_390 Hb_000347_390 Hb_001473_110--Hb_000347_390 Hb_000347_400 Hb_000347_400 Hb_001473_110--Hb_000347_400 Hb_001089_050 Hb_001089_050 Hb_001545_150--Hb_001089_050 Hb_001545_150--Hb_031042_050 Hb_000402_230 Hb_000402_230 Hb_001545_150--Hb_000402_230 Hb_001545_150--Hb_003918_030 Hb_001545_150--Hb_001279_120 Hb_003918_030--Hb_001473_110 Hb_003929_210 Hb_003929_210 Hb_003918_030--Hb_003929_210 Hb_003939_060 Hb_003939_060 Hb_003918_030--Hb_003939_060 Hb_000110_350 Hb_000110_350 Hb_003918_030--Hb_000110_350 Hb_031042_050--Hb_000028_130 Hb_001322_130 Hb_001322_130 Hb_031042_050--Hb_001322_130 Hb_000069_470 Hb_000069_470 Hb_031042_050--Hb_000069_470 Hb_002253_080 Hb_002253_080 Hb_031042_050--Hb_002253_080 Hb_004410_120 Hb_004410_120 Hb_031042_050--Hb_004410_120 Hb_000099_040 Hb_000099_040 Hb_001279_120--Hb_000099_040 Hb_002329_020 Hb_002329_020 Hb_001279_120--Hb_002329_020 Hb_009150_020 Hb_009150_020 Hb_001279_120--Hb_009150_020 Hb_002085_030 Hb_002085_030 Hb_001279_120--Hb_002085_030 Hb_012194_030 Hb_012194_030 Hb_001279_120--Hb_012194_030 Hb_001488_180--Hb_000028_130 Hb_004204_010 Hb_004204_010 Hb_001488_180--Hb_004204_010 Hb_010712_050 Hb_010712_050 Hb_001488_180--Hb_010712_050 Hb_000017_220 Hb_000017_220 Hb_001488_180--Hb_000017_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3866 33.1496 15.757 17.8287 11.7766 13.3328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.87448 9.40488 15.2184 14.503 19.8048

CAGE analysis