Hb_000479_090

Information

Type -
Description -
Location Contig479: 61840-64602
Sequence    

Annotation

kegg
ID rcu:RCOM_0524640
description hypothetical protein
nr
ID XP_012084800.1
description PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K622
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19918 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger rna-binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44609: 62002-64560
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_090 0.0 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
2 Hb_000384_100 0.0502260393 - - hydrolase, putative [Ricinus communis]
3 Hb_000059_370 0.0559569348 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
4 Hb_000920_110 0.0588742499 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
5 Hb_004127_020 0.0598617695 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
6 Hb_000676_180 0.0662931643 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
7 Hb_002686_020 0.0679529691 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
8 Hb_004143_150 0.07132269 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
9 Hb_002056_050 0.0720268704 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
10 Hb_000373_120 0.0738305366 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
11 Hb_000230_510 0.0750033404 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
12 Hb_026549_040 0.0759445248 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
13 Hb_000172_320 0.0771541728 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
14 Hb_159809_020 0.0771598927 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_015279_010 0.0791876531 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
16 Hb_010068_020 0.0794475045 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
17 Hb_002226_070 0.0797861875 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
18 Hb_004116_190 0.0798721836 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
19 Hb_001105_030 0.0804594143 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
20 Hb_003540_240 0.0811585597 - - PREDICTED: ribosomal RNA-processing protein 17 [Jatropha curcas]

Gene co-expression network

sample Hb_000479_090 Hb_000479_090 Hb_000384_100 Hb_000384_100 Hb_000479_090--Hb_000384_100 Hb_000059_370 Hb_000059_370 Hb_000479_090--Hb_000059_370 Hb_000920_110 Hb_000920_110 Hb_000479_090--Hb_000920_110 Hb_004127_020 Hb_004127_020 Hb_000479_090--Hb_004127_020 Hb_000676_180 Hb_000676_180 Hb_000479_090--Hb_000676_180 Hb_002686_020 Hb_002686_020 Hb_000479_090--Hb_002686_020 Hb_000384_100--Hb_000059_370 Hb_010068_020 Hb_010068_020 Hb_000384_100--Hb_010068_020 Hb_002183_090 Hb_002183_090 Hb_000384_100--Hb_002183_090 Hb_000230_510 Hb_000230_510 Hb_000384_100--Hb_000230_510 Hb_000384_100--Hb_000920_110 Hb_001105_030 Hb_001105_030 Hb_000059_370--Hb_001105_030 Hb_002226_070 Hb_002226_070 Hb_000059_370--Hb_002226_070 Hb_002534_150 Hb_002534_150 Hb_000059_370--Hb_002534_150 Hb_001821_010 Hb_001821_010 Hb_000059_370--Hb_001821_010 Hb_003226_100 Hb_003226_100 Hb_000920_110--Hb_003226_100 Hb_002056_050 Hb_002056_050 Hb_000920_110--Hb_002056_050 Hb_001484_070 Hb_001484_070 Hb_000920_110--Hb_001484_070 Hb_010175_040 Hb_010175_040 Hb_000920_110--Hb_010175_040 Hb_001616_040 Hb_001616_040 Hb_000920_110--Hb_001616_040 Hb_004143_150 Hb_004143_150 Hb_004127_020--Hb_004143_150 Hb_000265_050 Hb_000265_050 Hb_004127_020--Hb_000265_050 Hb_004899_370 Hb_004899_370 Hb_004127_020--Hb_004899_370 Hb_002798_020 Hb_002798_020 Hb_004127_020--Hb_002798_020 Hb_000840_180 Hb_000840_180 Hb_004127_020--Hb_000840_180 Hb_004116_190 Hb_004116_190 Hb_000676_180--Hb_004116_190 Hb_005725_250 Hb_005725_250 Hb_000676_180--Hb_005725_250 Hb_012286_030 Hb_012286_030 Hb_000676_180--Hb_012286_030 Hb_005846_040 Hb_005846_040 Hb_000676_180--Hb_005846_040 Hb_004635_100 Hb_004635_100 Hb_000676_180--Hb_004635_100 Hb_003050_080 Hb_003050_080 Hb_002686_020--Hb_003050_080 Hb_008878_030 Hb_008878_030 Hb_002686_020--Hb_008878_030 Hb_001540_010 Hb_001540_010 Hb_002686_020--Hb_001540_010 Hb_000331_080 Hb_000331_080 Hb_002686_020--Hb_000331_080 Hb_002686_020--Hb_001821_010 Hb_007416_030 Hb_007416_030 Hb_002686_020--Hb_007416_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0352 8.44157 7.88519 11.0081 12.2642 14.3921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.4172 34.72 16.2742 10.0625 11.4516

CAGE analysis