Hb_000479_130

Information

Type -
Description -
Location Contig479: 76286-78301
Sequence    

Annotation

kegg
ID pop:POPTR_0004s12330g
description POPTRDRAFT_556345; hypothetical protein
nr
ID XP_012081219.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g39350 [Jatropha curcas]
swissprot
ID Q9FLZ9
description Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
trembl
ID A0A067KEL1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17046 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44612: 77230-77495
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_130 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350 [Jatropha curcas]
2 Hb_004306_060 0.0647120178 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
3 Hb_000236_140 0.0831690868 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
4 Hb_007416_270 0.0957534466 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
5 Hb_000934_270 0.0994284946 - - PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Populus euphratica]
6 Hb_000172_560 0.111756356 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Jatropha curcas]
7 Hb_007075_050 0.1140781429 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_003687_100 0.1142518868 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
9 Hb_004128_180 0.1240110128 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_119600_040 0.1261872363 - - hypothetical protein JCGZ_08045 [Jatropha curcas]
11 Hb_000576_040 0.1285340794 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
12 Hb_000059_220 0.1299304429 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
13 Hb_006922_030 0.1316318177 - - ubiquitin, putative [Ricinus communis]
14 Hb_001085_170 0.1317144639 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
15 Hb_046198_010 0.1329525704 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
16 Hb_178968_110 0.1341470002 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
17 Hb_005043_010 0.1350497936 - - calcium ion binding protein, putative [Ricinus communis]
18 Hb_005532_060 0.1367249702 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
19 Hb_000179_210 0.1367451711 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
20 Hb_002498_060 0.1373540856 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000479_130 Hb_000479_130 Hb_004306_060 Hb_004306_060 Hb_000479_130--Hb_004306_060 Hb_000236_140 Hb_000236_140 Hb_000479_130--Hb_000236_140 Hb_007416_270 Hb_007416_270 Hb_000479_130--Hb_007416_270 Hb_000934_270 Hb_000934_270 Hb_000479_130--Hb_000934_270 Hb_000172_560 Hb_000172_560 Hb_000479_130--Hb_000172_560 Hb_007075_050 Hb_007075_050 Hb_000479_130--Hb_007075_050 Hb_004306_060--Hb_000934_270 Hb_004306_060--Hb_000236_140 Hb_002498_060 Hb_002498_060 Hb_004306_060--Hb_002498_060 Hb_000059_220 Hb_000059_220 Hb_004306_060--Hb_000059_220 Hb_000193_250 Hb_000193_250 Hb_004306_060--Hb_000193_250 Hb_003687_100 Hb_003687_100 Hb_000236_140--Hb_003687_100 Hb_004128_180 Hb_004128_180 Hb_000236_140--Hb_004128_180 Hb_000236_140--Hb_007416_270 Hb_000236_140--Hb_007075_050 Hb_000236_140--Hb_000172_560 Hb_001002_030 Hb_001002_030 Hb_007416_270--Hb_001002_030 Hb_007416_270--Hb_003687_100 Hb_000865_060 Hb_000865_060 Hb_007416_270--Hb_000865_060 Hb_008695_210 Hb_008695_210 Hb_007416_270--Hb_008695_210 Hb_010172_050 Hb_010172_050 Hb_000934_270--Hb_010172_050 Hb_178968_110 Hb_178968_110 Hb_000934_270--Hb_178968_110 Hb_000022_250 Hb_000022_250 Hb_000934_270--Hb_000022_250 Hb_003266_130 Hb_003266_130 Hb_000934_270--Hb_003266_130 Hb_029584_130 Hb_029584_130 Hb_000934_270--Hb_029584_130 Hb_000007_150 Hb_000007_150 Hb_000934_270--Hb_000007_150 Hb_005188_090 Hb_005188_090 Hb_000172_560--Hb_005188_090 Hb_000172_560--Hb_007416_270 Hb_001189_050 Hb_001189_050 Hb_000172_560--Hb_001189_050 Hb_000172_560--Hb_003687_100 Hb_000935_050 Hb_000935_050 Hb_007075_050--Hb_000935_050 Hb_119600_040 Hb_119600_040 Hb_007075_050--Hb_119600_040 Hb_000019_130 Hb_000019_130 Hb_007075_050--Hb_000019_130 Hb_000019_060 Hb_000019_060 Hb_007075_050--Hb_000019_060 Hb_007075_050--Hb_003687_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9874 4.62968 2.84385 1.7559 9.37261 10.5179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.35303 10.7896 32.016 4.39728 5.6554

CAGE analysis