Hb_000479_170

Information

Type -
Description -
Location Contig479: 118303-124082
Sequence    

Annotation

kegg
ID rcu:RCOM_0524340
description chaperone clpb, putative
nr
ID XP_002526076.1
description chaperone clpb, putative [Ricinus communis]
swissprot
ID Q9LF37
description Chaperone protein ClpB3, chloroplastic OS=Arabidopsis thaliana GN=CLPB3 PE=2 SV=1
trembl
ID B9SJA7
description Chaperone clpb, putative OS=Ricinus communis GN=RCOM_0524340 PE=3 SV=1
Gene Ontology
ID GO:0009570
description chaperone protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44621: 118258-124309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_170 0.0 - - chaperone clpb, putative [Ricinus communis]
2 Hb_007769_040 0.0874654743 - - PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]
3 Hb_011931_060 0.0881740877 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
4 Hb_005250_010 0.0887905984 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
5 Hb_025477_050 0.0966548698 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_005211_020 0.1051431493 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
7 Hb_007545_130 0.1053261262 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
8 Hb_005250_030 0.1060997497 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
9 Hb_000331_560 0.1062524054 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
10 Hb_007192_090 0.1063064192 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
11 Hb_012053_090 0.1075199781 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
12 Hb_013405_080 0.108961377 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
13 Hb_009252_040 0.1096709436 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
14 Hb_000033_110 0.1098713491 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
15 Hb_002600_060 0.1115157236 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
16 Hb_002495_060 0.1129876663 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_022250_100 0.1135883384 - - calnexin, putative [Ricinus communis]
18 Hb_000589_110 0.114049341 - - PREDICTED: uncharacterized protein LOC105647614 isoform X1 [Jatropha curcas]
19 Hb_000958_070 0.1163961512 - - hypothetical protein PRUPE_ppa007681mg [Prunus persica]
20 Hb_000934_110 0.1166007856 - - PREDICTED: protein trichome berefringence-like 7 [Jatropha curcas]

Gene co-expression network

sample Hb_000479_170 Hb_000479_170 Hb_007769_040 Hb_007769_040 Hb_000479_170--Hb_007769_040 Hb_011931_060 Hb_011931_060 Hb_000479_170--Hb_011931_060 Hb_005250_010 Hb_005250_010 Hb_000479_170--Hb_005250_010 Hb_025477_050 Hb_025477_050 Hb_000479_170--Hb_025477_050 Hb_005211_020 Hb_005211_020 Hb_000479_170--Hb_005211_020 Hb_007545_130 Hb_007545_130 Hb_000479_170--Hb_007545_130 Hb_007769_040--Hb_025477_050 Hb_000589_110 Hb_000589_110 Hb_007769_040--Hb_000589_110 Hb_000345_370 Hb_000345_370 Hb_007769_040--Hb_000345_370 Hb_013405_080 Hb_013405_080 Hb_007769_040--Hb_013405_080 Hb_001220_050 Hb_001220_050 Hb_007769_040--Hb_001220_050 Hb_000816_100 Hb_000816_100 Hb_011931_060--Hb_000816_100 Hb_002368_070 Hb_002368_070 Hb_011931_060--Hb_002368_070 Hb_000958_070 Hb_000958_070 Hb_011931_060--Hb_000958_070 Hb_000331_560 Hb_000331_560 Hb_011931_060--Hb_000331_560 Hb_000033_110 Hb_000033_110 Hb_011931_060--Hb_000033_110 Hb_005250_010--Hb_013405_080 Hb_005250_010--Hb_025477_050 Hb_005914_040 Hb_005914_040 Hb_005250_010--Hb_005914_040 Hb_004218_190 Hb_004218_190 Hb_005250_010--Hb_004218_190 Hb_026053_040 Hb_026053_040 Hb_005250_010--Hb_026053_040 Hb_005250_010--Hb_000033_110 Hb_025477_050--Hb_013405_080 Hb_001472_160 Hb_001472_160 Hb_025477_050--Hb_001472_160 Hb_000144_060 Hb_000144_060 Hb_025477_050--Hb_000144_060 Hb_025477_050--Hb_000345_370 Hb_001660_120 Hb_001660_120 Hb_025477_050--Hb_001660_120 Hb_002600_060 Hb_002600_060 Hb_005211_020--Hb_002600_060 Hb_000826_070 Hb_000826_070 Hb_005211_020--Hb_000826_070 Hb_002973_110 Hb_002973_110 Hb_005211_020--Hb_002973_110 Hb_000608_300 Hb_000608_300 Hb_005211_020--Hb_000608_300 Hb_013459_020 Hb_013459_020 Hb_005211_020--Hb_013459_020 Hb_000925_090 Hb_000925_090 Hb_005211_020--Hb_000925_090 Hb_003506_050 Hb_003506_050 Hb_007545_130--Hb_003506_050 Hb_013459_010 Hb_013459_010 Hb_007545_130--Hb_013459_010 Hb_005250_030 Hb_005250_030 Hb_007545_130--Hb_005250_030 Hb_007545_130--Hb_000925_090 Hb_007545_130--Hb_002600_060 Hb_007545_130--Hb_005211_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4254 26.8617 21.1735 26.9152 27.9503 28.559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5115 8.23477 12.9242 16.0339 78.5214

CAGE analysis