Hb_000479_200

Information

Type -
Description -
Location Contig479: 140198-142144
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12600g
description POPTRDRAFT_668636; hypothetical protein
nr
ID XP_012084781.1
description PREDICTED: uncharacterized protein LOC105644128 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JWR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19907 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44639: 140056-143644 , PASA_asmbl_44640: 142837-143227
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_200 0.0 - - PREDICTED: uncharacterized protein LOC105644128 [Jatropha curcas]
2 Hb_003032_010 0.1129540074 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
3 Hb_003943_040 0.1169897273 - - DNA binding protein, putative [Ricinus communis]
4 Hb_017110_010 0.119005001 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g55760 [Jatropha curcas]
5 Hb_011316_040 0.1190411488 - - peptidase, putative [Ricinus communis]
6 Hb_001975_140 0.1216774013 - - PREDICTED: urease accessory protein F [Jatropha curcas]
7 Hb_000173_290 0.1217239472 - - guanylate kinase, putative [Ricinus communis]
8 Hb_002182_040 0.1274109271 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_000281_110 0.1287162339 - - PREDICTED: pumilio homolog 12 [Jatropha curcas]
10 Hb_008790_030 0.1287597765 - - PREDICTED: probable magnesium transporter NIPA9 [Jatropha curcas]
11 Hb_002200_080 0.1300302321 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
12 Hb_000069_110 0.1319413564 - - PREDICTED: nephrocystin-3-like isoform X2 [Jatropha curcas]
13 Hb_000206_210 0.1343582226 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
14 Hb_004724_080 0.1363357486 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003195_070 0.1364534509 - - Uncharacterized protein isoform 1 [Theobroma cacao]
16 Hb_001277_330 0.1392148049 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
17 Hb_001959_070 0.1402183642 - - PREDICTED: uncharacterized protein LOC105638451 isoform X1 [Jatropha curcas]
18 Hb_002506_020 0.1409342551 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
19 Hb_000648_110 0.1411088703 - - PREDICTED: D-xylose-proton symporter-like 3, chloroplastic [Jatropha curcas]
20 Hb_000415_040 0.1412866809 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000479_200 Hb_000479_200 Hb_003032_010 Hb_003032_010 Hb_000479_200--Hb_003032_010 Hb_003943_040 Hb_003943_040 Hb_000479_200--Hb_003943_040 Hb_017110_010 Hb_017110_010 Hb_000479_200--Hb_017110_010 Hb_011316_040 Hb_011316_040 Hb_000479_200--Hb_011316_040 Hb_001975_140 Hb_001975_140 Hb_000479_200--Hb_001975_140 Hb_000173_290 Hb_000173_290 Hb_000479_200--Hb_000173_290 Hb_000069_110 Hb_000069_110 Hb_003032_010--Hb_000069_110 Hb_010655_010 Hb_010655_010 Hb_003032_010--Hb_010655_010 Hb_002687_110 Hb_002687_110 Hb_003032_010--Hb_002687_110 Hb_032264_110 Hb_032264_110 Hb_003032_010--Hb_032264_110 Hb_003032_010--Hb_017110_010 Hb_003943_040--Hb_002687_110 Hb_004738_040 Hb_004738_040 Hb_003943_040--Hb_004738_040 Hb_001277_330 Hb_001277_330 Hb_003943_040--Hb_001277_330 Hb_000409_020 Hb_000409_020 Hb_003943_040--Hb_000409_020 Hb_003943_040--Hb_011316_040 Hb_004724_420 Hb_004724_420 Hb_003943_040--Hb_004724_420 Hb_000629_120 Hb_000629_120 Hb_017110_010--Hb_000629_120 Hb_181288_020 Hb_181288_020 Hb_017110_010--Hb_181288_020 Hb_000161_060 Hb_000161_060 Hb_017110_010--Hb_000161_060 Hb_000138_110 Hb_000138_110 Hb_017110_010--Hb_000138_110 Hb_011316_040--Hb_001277_330 Hb_000236_070 Hb_000236_070 Hb_011316_040--Hb_000236_070 Hb_006541_030 Hb_006541_030 Hb_011316_040--Hb_006541_030 Hb_000648_110 Hb_000648_110 Hb_011316_040--Hb_000648_110 Hb_000206_210 Hb_000206_210 Hb_011316_040--Hb_000206_210 Hb_000928_210 Hb_000928_210 Hb_011316_040--Hb_000928_210 Hb_005489_110 Hb_005489_110 Hb_001975_140--Hb_005489_110 Hb_132835_010 Hb_132835_010 Hb_001975_140--Hb_132835_010 Hb_001975_140--Hb_000173_290 Hb_005194_010 Hb_005194_010 Hb_001975_140--Hb_005194_010 Hb_000342_130 Hb_000342_130 Hb_001975_140--Hb_000342_130 Hb_009658_020 Hb_009658_020 Hb_001975_140--Hb_009658_020 Hb_000120_790 Hb_000120_790 Hb_000173_290--Hb_000120_790 Hb_000054_090 Hb_000054_090 Hb_000173_290--Hb_000054_090 Hb_000173_290--Hb_000206_210 Hb_000173_290--Hb_000342_130 Hb_002200_080 Hb_002200_080 Hb_000173_290--Hb_002200_080 Hb_000777_040 Hb_000777_040 Hb_000173_290--Hb_000777_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.0934 11.469 8.80491 45.1167 56.9575 34.5815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.4813 50.1468 57.6524 12.8937 36.9719

CAGE analysis