Hb_000479_250

Information

Type -
Description -
Location Contig479: 190291-195373
Sequence    

Annotation

kegg
ID rcu:RCOM_0169110
description rRNA methylase, putative (EC:2.1.1.34)
nr
ID XP_012084774.1
description PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
swissprot
ID O67577
description tRNA (guanosine(18)-2'-O)-methyltransferase OS=Aquifex aeolicus (strain VF5) GN=trmH PE=1 SV=1
trembl
ID B9T3S9
description rRNA methylase, putative OS=Ricinus communis GN=RCOM_0169110 PE=4 SV=1
Gene Ontology
ID GO:0003723
description trna rrna methyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44653: 190317-195293 , PASA_asmbl_44654: 192525-192939 , PASA_asmbl_44657: 193041-195012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_250 0.0 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
2 Hb_009328_020 0.0612328483 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006274_030 0.0654029453 - - F-box and wd40 domain protein, putative [Ricinus communis]
4 Hb_001369_750 0.0659561018 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
5 Hb_001366_180 0.0665839948 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
6 Hb_006275_070 0.0722767876 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
7 Hb_003153_010 0.0726946784 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
8 Hb_002496_020 0.0793948253 - - DNA binding protein, putative [Ricinus communis]
9 Hb_041290_020 0.0793961331 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
10 Hb_004531_140 0.0805518413 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
11 Hb_000656_010 0.080769042 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
12 Hb_032920_050 0.0809958308 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
13 Hb_000181_130 0.0821384045 - - ATP binding protein, putative [Ricinus communis]
14 Hb_005144_050 0.0836651463 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
15 Hb_003376_230 0.0856305038 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
16 Hb_109000_020 0.0877621607 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
17 Hb_036790_080 0.0878810203 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
18 Hb_001898_210 0.0884253846 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
19 Hb_001014_160 0.0892735536 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
20 Hb_029879_070 0.091344654 - - PREDICTED: phospholipase A I [Jatropha curcas]

Gene co-expression network

sample Hb_000479_250 Hb_000479_250 Hb_009328_020 Hb_009328_020 Hb_000479_250--Hb_009328_020 Hb_006274_030 Hb_006274_030 Hb_000479_250--Hb_006274_030 Hb_001369_750 Hb_001369_750 Hb_000479_250--Hb_001369_750 Hb_001366_180 Hb_001366_180 Hb_000479_250--Hb_001366_180 Hb_006275_070 Hb_006275_070 Hb_000479_250--Hb_006275_070 Hb_003153_010 Hb_003153_010 Hb_000479_250--Hb_003153_010 Hb_000181_130 Hb_000181_130 Hb_009328_020--Hb_000181_130 Hb_109000_020 Hb_109000_020 Hb_009328_020--Hb_109000_020 Hb_002289_080 Hb_002289_080 Hb_009328_020--Hb_002289_080 Hb_001898_210 Hb_001898_210 Hb_009328_020--Hb_001898_210 Hb_009898_050 Hb_009898_050 Hb_009328_020--Hb_009898_050 Hb_006274_030--Hb_001366_180 Hb_001971_010 Hb_001971_010 Hb_006274_030--Hb_001971_010 Hb_000053_020 Hb_000053_020 Hb_006274_030--Hb_000053_020 Hb_006478_020 Hb_006478_020 Hb_006274_030--Hb_006478_020 Hb_002014_030 Hb_002014_030 Hb_006274_030--Hb_002014_030 Hb_000261_060 Hb_000261_060 Hb_001369_750--Hb_000261_060 Hb_002276_020 Hb_002276_020 Hb_001369_750--Hb_002276_020 Hb_001369_750--Hb_001366_180 Hb_001369_750--Hb_006274_030 Hb_002496_020 Hb_002496_020 Hb_001369_750--Hb_002496_020 Hb_005144_050 Hb_005144_050 Hb_001366_180--Hb_005144_050 Hb_000289_110 Hb_000289_110 Hb_001366_180--Hb_000289_110 Hb_001366_180--Hb_006478_020 Hb_001366_180--Hb_002014_030 Hb_029879_070 Hb_029879_070 Hb_006275_070--Hb_029879_070 Hb_000656_010 Hb_000656_010 Hb_006275_070--Hb_000656_010 Hb_001936_130 Hb_001936_130 Hb_006275_070--Hb_001936_130 Hb_008176_010 Hb_008176_010 Hb_006275_070--Hb_008176_010 Hb_004159_020 Hb_004159_020 Hb_006275_070--Hb_004159_020 Hb_004108_160 Hb_004108_160 Hb_003153_010--Hb_004108_160 Hb_000556_090 Hb_000556_090 Hb_003153_010--Hb_000556_090 Hb_003376_230 Hb_003376_230 Hb_003153_010--Hb_003376_230 Hb_002769_030 Hb_002769_030 Hb_003153_010--Hb_002769_030 Hb_008421_020 Hb_008421_020 Hb_003153_010--Hb_008421_020 Hb_000184_170 Hb_000184_170 Hb_003153_010--Hb_000184_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.62947 3.75936 6.47867 9.24077 6.58679 10.233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.25497 8.3535 7.62871 7.33998 14.6065

CAGE analysis