Hb_000479_330

Information

Type -
Description -
Location Contig479: 228505-234400
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12480g
description POPTRDRAFT_577698; hypothetical protein
nr
ID XP_012084766.1
description PREDICTED: uncharacterized protein LOC105644113 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4M6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19894 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44661: 228515-234300
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_330 0.0 - - PREDICTED: uncharacterized protein LOC105644113 isoform X1 [Jatropha curcas]
2 Hb_002154_050 0.0995552937 - - RNA binding protein, putative [Ricinus communis]
3 Hb_003057_120 0.1046161012 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
4 Hb_000110_160 0.1053474636 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000805_090 0.1085976482 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
6 Hb_001047_020 0.1094549411 - - -
7 Hb_000696_110 0.110159616 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
8 Hb_006602_020 0.1141038775 - - unknown [Medicago truncatula]
9 Hb_000446_090 0.1146645345 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
10 Hb_010174_120 0.1149622918 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
11 Hb_000025_480 0.1150545595 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
12 Hb_004046_010 0.1152879173 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
13 Hb_002357_040 0.1154972335 - - latex-abundant protein [Hevea brasiliensis]
14 Hb_005779_100 0.1180220057 - - DNAJ [Theobroma cacao]
15 Hb_000049_070 0.1204290554 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
16 Hb_002903_110 0.1208922906 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
17 Hb_011174_070 0.1222267 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
18 Hb_000152_140 0.1227444329 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
19 Hb_000387_080 0.1235485141 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
20 Hb_010710_030 0.1248760751 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]

Gene co-expression network

sample Hb_000479_330 Hb_000479_330 Hb_002154_050 Hb_002154_050 Hb_000479_330--Hb_002154_050 Hb_003057_120 Hb_003057_120 Hb_000479_330--Hb_003057_120 Hb_000110_160 Hb_000110_160 Hb_000479_330--Hb_000110_160 Hb_000805_090 Hb_000805_090 Hb_000479_330--Hb_000805_090 Hb_001047_020 Hb_001047_020 Hb_000479_330--Hb_001047_020 Hb_000696_110 Hb_000696_110 Hb_000479_330--Hb_000696_110 Hb_005779_100 Hb_005779_100 Hb_002154_050--Hb_005779_100 Hb_005539_290 Hb_005539_290 Hb_002154_050--Hb_005539_290 Hb_006602_010 Hb_006602_010 Hb_002154_050--Hb_006602_010 Hb_006602_020 Hb_006602_020 Hb_002154_050--Hb_006602_020 Hb_001473_130 Hb_001473_130 Hb_002154_050--Hb_001473_130 Hb_011174_070 Hb_011174_070 Hb_003057_120--Hb_011174_070 Hb_000387_080 Hb_000387_080 Hb_003057_120--Hb_000387_080 Hb_005357_150 Hb_005357_150 Hb_003057_120--Hb_005357_150 Hb_001366_220 Hb_001366_220 Hb_003057_120--Hb_001366_220 Hb_001981_090 Hb_001981_090 Hb_003057_120--Hb_001981_090 Hb_003057_120--Hb_000805_090 Hb_001329_300 Hb_001329_300 Hb_000110_160--Hb_001329_300 Hb_008066_010 Hb_008066_010 Hb_000110_160--Hb_008066_010 Hb_011918_080 Hb_011918_080 Hb_000110_160--Hb_011918_080 Hb_001051_100 Hb_001051_100 Hb_000110_160--Hb_001051_100 Hb_000567_260 Hb_000567_260 Hb_000110_160--Hb_000567_260 Hb_178968_110 Hb_178968_110 Hb_000110_160--Hb_178968_110 Hb_003638_030 Hb_003638_030 Hb_000805_090--Hb_003638_030 Hb_000805_090--Hb_001981_090 Hb_002357_040 Hb_002357_040 Hb_000805_090--Hb_002357_040 Hb_000809_040 Hb_000809_040 Hb_000805_090--Hb_000809_040 Hb_000805_090--Hb_011174_070 Hb_003861_080 Hb_003861_080 Hb_000805_090--Hb_003861_080 Hb_001840_080 Hb_001840_080 Hb_001047_020--Hb_001840_080 Hb_002215_050 Hb_002215_050 Hb_001047_020--Hb_002215_050 Hb_000120_800 Hb_000120_800 Hb_001047_020--Hb_000120_800 Hb_002686_270 Hb_002686_270 Hb_001047_020--Hb_002686_270 Hb_000446_090 Hb_000446_090 Hb_001047_020--Hb_000446_090 Hb_004046_010 Hb_004046_010 Hb_001047_020--Hb_004046_010 Hb_000152_140 Hb_000152_140 Hb_000696_110--Hb_000152_140 Hb_000057_060 Hb_000057_060 Hb_000696_110--Hb_000057_060 Hb_000599_120 Hb_000599_120 Hb_000696_110--Hb_000599_120 Hb_000538_210 Hb_000538_210 Hb_000696_110--Hb_000538_210 Hb_010174_130 Hb_010174_130 Hb_000696_110--Hb_010174_130 Hb_000696_110--Hb_002357_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.2027 11.3411 2.71687 11.6166 40.2944 58.3381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.0584 19.8524 82.7042 13.5206 8.09077

CAGE analysis