Hb_000480_020

Information

Type -
Description -
Location Contig480: 23740-23976
Sequence    

Annotation

kegg
ID rcu:RCOM_0724350
description hypothetical protein
nr
ID XP_002524887.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SFW8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0724350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44675: 23478-23989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000480_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000155_130 0.0070885177 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005841_070 0.0430410138 - - conserved hypothetical protein [Ricinus communis]
4 Hb_092655_010 0.0663314779 - - PREDICTED: uncharacterized protein LOC105650151 [Jatropha curcas]
5 Hb_009164_010 0.0783195228 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
6 Hb_002757_040 0.0878274607 - - -
7 Hb_000594_010 0.0974351833 - - PREDICTED: lysine histidine transporter-like 6 isoform X3 [Populus euphratica]
8 Hb_001174_040 0.10379551 - - -
9 Hb_002757_030 0.1041524601 - - unnamed protein product [Vitis vinifera]
10 Hb_009620_080 0.1076922666 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
11 Hb_000028_090 0.1092978262 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]
12 Hb_010327_060 0.1119048665 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
13 Hb_009767_040 0.1128049398 - - PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica]
14 Hb_004030_040 0.1131857857 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
15 Hb_000521_030 0.1138954728 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
16 Hb_025107_010 0.1144256212 - - PREDICTED: alkaline/neutral invertase CINV2-like [Sesamum indicum]
17 Hb_027472_250 0.1197136385 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
18 Hb_005043_040 0.1219032052 - - hypothetical protein POPTR_0004s17180g [Populus trichocarpa]
19 Hb_000024_100 0.1220369366 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
20 Hb_000487_350 0.1334790311 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000480_020 Hb_000480_020 Hb_000155_130 Hb_000155_130 Hb_000480_020--Hb_000155_130 Hb_005841_070 Hb_005841_070 Hb_000480_020--Hb_005841_070 Hb_092655_010 Hb_092655_010 Hb_000480_020--Hb_092655_010 Hb_009164_010 Hb_009164_010 Hb_000480_020--Hb_009164_010 Hb_002757_040 Hb_002757_040 Hb_000480_020--Hb_002757_040 Hb_000594_010 Hb_000594_010 Hb_000480_020--Hb_000594_010 Hb_000155_130--Hb_005841_070 Hb_000155_130--Hb_092655_010 Hb_000155_130--Hb_009164_010 Hb_000155_130--Hb_002757_040 Hb_000155_130--Hb_000594_010 Hb_009620_080 Hb_009620_080 Hb_005841_070--Hb_009620_080 Hb_005841_070--Hb_002757_040 Hb_000028_090 Hb_000028_090 Hb_005841_070--Hb_000028_090 Hb_001174_040 Hb_001174_040 Hb_005841_070--Hb_001174_040 Hb_025107_010 Hb_025107_010 Hb_092655_010--Hb_025107_010 Hb_005043_040 Hb_005043_040 Hb_092655_010--Hb_005043_040 Hb_000024_100 Hb_000024_100 Hb_092655_010--Hb_000024_100 Hb_092655_010--Hb_000594_010 Hb_004030_040 Hb_004030_040 Hb_009164_010--Hb_004030_040 Hb_002757_030 Hb_002757_030 Hb_009164_010--Hb_002757_030 Hb_009164_010--Hb_002757_040 Hb_009164_010--Hb_000594_010 Hb_010327_060 Hb_010327_060 Hb_009164_010--Hb_010327_060 Hb_006651_020 Hb_006651_020 Hb_009164_010--Hb_006651_020 Hb_002757_040--Hb_010327_060 Hb_002757_040--Hb_000028_090 Hb_002757_040--Hb_002757_030 Hb_002757_040--Hb_009620_080 Hb_000868_020 Hb_000868_020 Hb_002757_040--Hb_000868_020 Hb_019953_010 Hb_019953_010 Hb_000594_010--Hb_019953_010 Hb_002636_170 Hb_002636_170 Hb_000594_010--Hb_002636_170 Hb_000696_130 Hb_000696_130 Hb_000594_010--Hb_000696_130 Hb_000594_010--Hb_025107_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 7.7699 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.54953

CAGE analysis