Hb_000481_010

Information

Type -
Description -
Location Contig481: 26301-27461
Sequence    

Annotation

kegg
ID rcu:RCOM_0210240
description Protein AFR, putative
nr
ID XP_012075229.1
description PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
swissprot
ID Q9SJ04
description F-box/kelch-repeat protein SKIP6 OS=Arabidopsis thaliana GN=SKIP6 PE=1 SV=1
trembl
ID A0A067KTV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09403 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44737: 26320-30235
cDNA
(Sanger)
(ID:Location)		 046_D04.ab1: 26422-27125

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000481_010 0.0 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
2 Hb_000340_510 0.0647885302 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
3 Hb_000784_090 0.0697893745 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
4 Hb_002249_140 0.0724731126 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
5 Hb_002026_110 0.0796233619 - - protein binding protein, putative [Ricinus communis]
6 Hb_002818_040 0.083632329 - - tRNA synthetase-related family protein [Populus trichocarpa]
7 Hb_002631_050 0.0851672464 - - membrane associated ring finger 1,8, putative [Ricinus communis]
8 Hb_000771_110 0.086767868 - - protein phosphatase 2C [Hevea brasiliensis]
9 Hb_003297_030 0.0898081774 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
10 Hb_002044_090 0.0906816035 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
11 Hb_024399_010 0.0917517358 - - PREDICTED: uncharacterized protein LOC105649031 [Jatropha curcas]
12 Hb_000733_060 0.0922409154 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
13 Hb_001936_050 0.0929494602 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
14 Hb_000172_400 0.0951688156 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
15 Hb_004324_280 0.095367656 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
16 Hb_005754_020 0.0978788727 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
17 Hb_005527_050 0.0991555482 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
18 Hb_000417_180 0.0998134317 - - 60S ribosomal protein L11, putative [Ricinus communis]
19 Hb_029281_010 0.1005710558 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
20 Hb_000284_200 0.1023704824 - - -

Gene co-expression network

sample Hb_000481_010 Hb_000481_010 Hb_000340_510 Hb_000340_510 Hb_000481_010--Hb_000340_510 Hb_000784_090 Hb_000784_090 Hb_000481_010--Hb_000784_090 Hb_002249_140 Hb_002249_140 Hb_000481_010--Hb_002249_140 Hb_002026_110 Hb_002026_110 Hb_000481_010--Hb_002026_110 Hb_002818_040 Hb_002818_040 Hb_000481_010--Hb_002818_040 Hb_002631_050 Hb_002631_050 Hb_000481_010--Hb_002631_050 Hb_000340_510--Hb_002818_040 Hb_000001_180 Hb_000001_180 Hb_000340_510--Hb_000001_180 Hb_000107_100 Hb_000107_100 Hb_000340_510--Hb_000107_100 Hb_000340_510--Hb_002026_110 Hb_017168_010 Hb_017168_010 Hb_000340_510--Hb_017168_010 Hb_033491_010 Hb_033491_010 Hb_000784_090--Hb_033491_010 Hb_002215_050 Hb_002215_050 Hb_000784_090--Hb_002215_050 Hb_000784_090--Hb_002249_140 Hb_001493_100 Hb_001493_100 Hb_000784_090--Hb_001493_100 Hb_001369_060 Hb_001369_060 Hb_000784_090--Hb_001369_060 Hb_000771_110 Hb_000771_110 Hb_002249_140--Hb_000771_110 Hb_008725_250 Hb_008725_250 Hb_002249_140--Hb_008725_250 Hb_000732_260 Hb_000732_260 Hb_002249_140--Hb_000732_260 Hb_002044_090 Hb_002044_090 Hb_002249_140--Hb_002044_090 Hb_001141_330 Hb_001141_330 Hb_002026_110--Hb_001141_330 Hb_002026_110--Hb_017168_010 Hb_002026_110--Hb_002818_040 Hb_029281_010 Hb_029281_010 Hb_002026_110--Hb_029281_010 Hb_000462_150 Hb_000462_150 Hb_002818_040--Hb_000462_150 Hb_003384_030 Hb_003384_030 Hb_002818_040--Hb_003384_030 Hb_002818_040--Hb_000001_180 Hb_005314_010 Hb_005314_010 Hb_002818_040--Hb_005314_010 Hb_005914_230 Hb_005914_230 Hb_002818_040--Hb_005914_230 Hb_185467_020 Hb_185467_020 Hb_002631_050--Hb_185467_020 Hb_008453_150 Hb_008453_150 Hb_002631_050--Hb_008453_150 Hb_000017_120 Hb_000017_120 Hb_002631_050--Hb_000017_120 Hb_002631_050--Hb_000340_510 Hb_000733_060 Hb_000733_060 Hb_002631_050--Hb_000733_060 Hb_022256_040 Hb_022256_040 Hb_002631_050--Hb_022256_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
222.818 58.1736 20.708 22.5042 198.648 149.436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
109.413 109.506 130.352 34.6711 21.7422

CAGE analysis