Hb_000481_040

Information

Type -
Description -
Location Contig481: 89438-101353
Sequence    

Annotation

kegg
ID rcu:RCOM_0210470
description developmentally regulated GTP-binding protein, putative
nr
ID XP_002532275.1
description developmentally regulated GTP-binding protein, putative [Ricinus communis]
swissprot
ID Q9SVA6
description Developmentally-regulated G-protein 3 OS=Arabidopsis thaliana GN=DRG3 PE=1 SV=1
trembl
ID B9T206
description Developmentally regulated GTP-binding protein, putative OS=Ricinus communis GN=RCOM_0210470 PE=4 SV=1
Gene Ontology
ID GO:0005829
description developmentally-regulated g-protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44743: 89498-101247
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000481_040 0.0 - - developmentally regulated GTP-binding protein, putative [Ricinus communis]
2 Hb_009265_080 0.0653576634 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
3 Hb_002007_350 0.0706651991 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
4 Hb_003641_050 0.0759322505 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
5 Hb_008253_010 0.0773618665 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
6 Hb_005662_030 0.0780070826 - - protein with unknown function [Ricinus communis]
7 Hb_001017_040 0.0802860211 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
8 Hb_005306_110 0.0816179356 - - casein kinase, putative [Ricinus communis]
9 Hb_000120_800 0.0830273213 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
10 Hb_000034_050 0.0867251269 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
11 Hb_033153_050 0.0868185594 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
12 Hb_004678_060 0.0880988731 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
13 Hb_000620_010 0.0881416974 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
14 Hb_000803_300 0.0891891177 - - nuclear movement protein nudc, putative [Ricinus communis]
15 Hb_001862_190 0.0901307751 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
16 Hb_000134_090 0.0902457288 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
17 Hb_006816_390 0.0904821217 - - protein phosphatase, putative [Ricinus communis]
18 Hb_000184_110 0.0912253765 - - hypothetical protein F383_18769 [Gossypium arboreum]
19 Hb_000498_010 0.0941149869 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_003656_160 0.0955059441 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]

Gene co-expression network

sample Hb_000481_040 Hb_000481_040 Hb_009265_080 Hb_009265_080 Hb_000481_040--Hb_009265_080 Hb_002007_350 Hb_002007_350 Hb_000481_040--Hb_002007_350 Hb_003641_050 Hb_003641_050 Hb_000481_040--Hb_003641_050 Hb_008253_010 Hb_008253_010 Hb_000481_040--Hb_008253_010 Hb_005662_030 Hb_005662_030 Hb_000481_040--Hb_005662_030 Hb_001017_040 Hb_001017_040 Hb_000481_040--Hb_001017_040 Hb_009265_080--Hb_002007_350 Hb_009265_080--Hb_008253_010 Hb_004678_060 Hb_004678_060 Hb_009265_080--Hb_004678_060 Hb_002400_180 Hb_002400_180 Hb_009265_080--Hb_002400_180 Hb_000803_300 Hb_000803_300 Hb_009265_080--Hb_000803_300 Hb_004195_280 Hb_004195_280 Hb_009265_080--Hb_004195_280 Hb_002007_350--Hb_008253_010 Hb_002007_350--Hb_004678_060 Hb_007590_080 Hb_007590_080 Hb_002007_350--Hb_007590_080 Hb_002007_350--Hb_000803_300 Hb_003656_160 Hb_003656_160 Hb_002007_350--Hb_003656_160 Hb_000922_330 Hb_000922_330 Hb_003641_050--Hb_000922_330 Hb_003641_050--Hb_005662_030 Hb_000649_050 Hb_000649_050 Hb_003641_050--Hb_000649_050 Hb_007477_080 Hb_007477_080 Hb_003641_050--Hb_007477_080 Hb_001100_050 Hb_001100_050 Hb_003641_050--Hb_001100_050 Hb_008253_010--Hb_004678_060 Hb_007336_020 Hb_007336_020 Hb_008253_010--Hb_007336_020 Hb_008253_010--Hb_007590_080 Hb_134364_010 Hb_134364_010 Hb_008253_010--Hb_134364_010 Hb_001862_190 Hb_001862_190 Hb_005662_030--Hb_001862_190 Hb_000620_010 Hb_000620_010 Hb_005662_030--Hb_000620_010 Hb_000184_110 Hb_000184_110 Hb_005662_030--Hb_000184_110 Hb_000028_610 Hb_000028_610 Hb_005662_030--Hb_000028_610 Hb_006065_020 Hb_006065_020 Hb_005662_030--Hb_006065_020 Hb_005662_030--Hb_001017_040 Hb_001017_040--Hb_000184_110 Hb_000120_800 Hb_000120_800 Hb_001017_040--Hb_000120_800 Hb_000179_020 Hb_000179_020 Hb_001017_040--Hb_000179_020 Hb_005396_130 Hb_005396_130 Hb_001017_040--Hb_005396_130 Hb_002039_010 Hb_002039_010 Hb_001017_040--Hb_002039_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.4947 22.9148 30.4121 19.1041 64.9208 74.1398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.7413 26.7299 51.9303 20.8746 19.9874

CAGE analysis