Hb_000482_010

Information

Type -
Description -
Location Contig482: 11176-16141
Sequence    

Annotation

kegg
ID rcu:RCOM_0797250
description ADP,ATP carrier protein, putative
nr
ID XP_012077267.1
description PREDICTED: probable ADP,ATP carrier protein At5g56450 [Jatropha curcas]
swissprot
ID Q9FM86
description Probable ADP,ATP carrier protein At5g56450 OS=Arabidopsis thaliana GN=At5g56450 PE=2 SV=1
trembl
ID A0A067KCY5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07657 PE=3 SV=1
Gene Ontology
ID GO:0005743
description probable carrier protein at5g56450

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44761: 11393-11659 , PASA_asmbl_44762: 11685-15894
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000482_010 0.0 - - PREDICTED: probable ADP,ATP carrier protein At5g56450 [Jatropha curcas]
2 Hb_000997_400 0.0712443281 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
3 Hb_006816_140 0.082594729 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]
4 Hb_003018_190 0.0945785991 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
5 Hb_001699_130 0.0960765926 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
6 Hb_000696_040 0.0972202766 - - protein phosphatase 2c, putative [Ricinus communis]
7 Hb_010608_050 0.1011533609 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
8 Hb_008695_100 0.1014503521 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
9 Hb_000019_130 0.1017498463 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
10 Hb_000723_080 0.1017615716 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
11 Hb_004128_180 0.1019415952 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000307_030 0.1021383393 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
13 Hb_000193_290 0.1021943028 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
14 Hb_000377_060 0.1022550034 - - ARF GTPase activator, putative [Ricinus communis]
15 Hb_000007_150 0.1032636227 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
16 Hb_000297_200 0.104376289 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
17 Hb_016901_010 0.1046048855 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
18 Hb_016065_010 0.1057147655 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
19 Hb_011381_100 0.1065011006 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Jatropha curcas]
20 Hb_000072_080 0.1074502197 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000482_010 Hb_000482_010 Hb_000997_400 Hb_000997_400 Hb_000482_010--Hb_000997_400 Hb_006816_140 Hb_006816_140 Hb_000482_010--Hb_006816_140 Hb_003018_190 Hb_003018_190 Hb_000482_010--Hb_003018_190 Hb_001699_130 Hb_001699_130 Hb_000482_010--Hb_001699_130 Hb_000696_040 Hb_000696_040 Hb_000482_010--Hb_000696_040 Hb_010608_050 Hb_010608_050 Hb_000482_010--Hb_010608_050 Hb_000297_200 Hb_000297_200 Hb_000997_400--Hb_000297_200 Hb_000059_220 Hb_000059_220 Hb_000997_400--Hb_000059_220 Hb_000997_400--Hb_003018_190 Hb_000457_150 Hb_000457_150 Hb_000997_400--Hb_000457_150 Hb_010710_040 Hb_010710_040 Hb_000997_400--Hb_010710_040 Hb_001158_140 Hb_001158_140 Hb_006816_140--Hb_001158_140 Hb_000200_050 Hb_000200_050 Hb_006816_140--Hb_000200_050 Hb_003266_130 Hb_003266_130 Hb_006816_140--Hb_003266_130 Hb_016901_010 Hb_016901_010 Hb_006816_140--Hb_016901_010 Hb_006816_140--Hb_000997_400 Hb_000614_230 Hb_000614_230 Hb_006816_140--Hb_000614_230 Hb_131864_040 Hb_131864_040 Hb_003018_190--Hb_131864_040 Hb_002603_160 Hb_002603_160 Hb_003018_190--Hb_002603_160 Hb_001141_280 Hb_001141_280 Hb_003018_190--Hb_001141_280 Hb_005488_010 Hb_005488_010 Hb_003018_190--Hb_005488_010 Hb_006846_110 Hb_006846_110 Hb_003018_190--Hb_006846_110 Hb_000617_150 Hb_000617_150 Hb_001699_130--Hb_000617_150 Hb_001699_130--Hb_000696_040 Hb_000120_680 Hb_000120_680 Hb_001699_130--Hb_000120_680 Hb_000723_080 Hb_000723_080 Hb_001699_130--Hb_000723_080 Hb_001699_130--Hb_010608_050 Hb_001699_130--Hb_016901_010 Hb_004607_030 Hb_004607_030 Hb_000696_040--Hb_004607_030 Hb_000696_040--Hb_016901_010 Hb_000696_040--Hb_000617_150 Hb_000062_220 Hb_000062_220 Hb_000696_040--Hb_000062_220 Hb_002631_060 Hb_002631_060 Hb_000696_040--Hb_002631_060 Hb_008695_100 Hb_008695_100 Hb_010608_050--Hb_008695_100 Hb_010608_050--Hb_004607_030 Hb_011030_020 Hb_011030_020 Hb_010608_050--Hb_011030_020 Hb_010608_050--Hb_000617_150 Hb_011534_030 Hb_011534_030 Hb_010608_050--Hb_011534_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6171 11.361 2.69426 10.0328 13.4951 17.3736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2518 29.3223 34.2993 6.57293 6.4451

CAGE analysis