Hb_000482_020

Information

Type -
Description -
Location Contig482: 18558-21981
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24400g
description POPTRDRAFT_819484; hypothetical protein
nr
ID AFH77950.1
description cell wall invertase [Manihot esculenta]
swissprot
ID Q43866
description Beta-fructofuranosidase, insoluble isoenzyme CWINV1 OS=Arabidopsis thaliana GN=CWINV1 PE=1 SV=1
trembl
ID I0CL50
description Cell wall invertase OS=Manihot esculenta GN=CWINV1 PE=2 SV=1
Gene Ontology
ID GO:0004553
description beta- insoluble isoenzyme cwinv1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44765: 18721-19933 , PASA_asmbl_44766: 19995-21409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000482_020 0.0 - - cell wall invertase [Manihot esculenta]
2 Hb_030827_070 0.0908539461 - - PREDICTED: transmembrane protein 161B [Jatropha curcas]
3 Hb_050454_010 0.1120167217 - - PREDICTED: uncharacterized protein LOC105630497 [Jatropha curcas]
4 Hb_009646_040 0.1128103157 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_003571_030 0.122361394 - - hypothetical protein JCGZ_25894 [Jatropha curcas]
6 Hb_044736_010 0.1267177046 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_000483_220 0.1280308055 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
8 Hb_000359_090 0.1295597721 - - PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial-like [Malus domestica]
9 Hb_000417_100 0.1313892538 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
10 Hb_000212_450 0.1316878471 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
11 Hb_000140_380 0.1391172467 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
12 Hb_000521_130 0.1392208684 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
13 Hb_032969_020 0.1394656528 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007416_090 0.1422256964 - - UDP-sugar transporter, putative [Ricinus communis]
15 Hb_000429_050 0.1430505597 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
16 Hb_004672_040 0.145146476 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
17 Hb_001766_080 0.145264448 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
18 Hb_004204_140 0.1476908392 transcription factor TF Family: C2H2 hypothetical protein RCOM_1470470 [Ricinus communis]
19 Hb_000085_400 0.1505566219 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
20 Hb_000249_070 0.151346928 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]

Gene co-expression network

sample Hb_000482_020 Hb_000482_020 Hb_030827_070 Hb_030827_070 Hb_000482_020--Hb_030827_070 Hb_050454_010 Hb_050454_010 Hb_000482_020--Hb_050454_010 Hb_009646_040 Hb_009646_040 Hb_000482_020--Hb_009646_040 Hb_003571_030 Hb_003571_030 Hb_000482_020--Hb_003571_030 Hb_044736_010 Hb_044736_010 Hb_000482_020--Hb_044736_010 Hb_000483_220 Hb_000483_220 Hb_000482_020--Hb_000483_220 Hb_030827_070--Hb_050454_010 Hb_022833_100 Hb_022833_100 Hb_030827_070--Hb_022833_100 Hb_000429_050 Hb_000429_050 Hb_030827_070--Hb_000429_050 Hb_030827_070--Hb_044736_010 Hb_001018_110 Hb_001018_110 Hb_030827_070--Hb_001018_110 Hb_050454_010--Hb_044736_010 Hb_050454_010--Hb_000483_220 Hb_001766_080 Hb_001766_080 Hb_050454_010--Hb_001766_080 Hb_001377_270 Hb_001377_270 Hb_050454_010--Hb_001377_270 Hb_050454_010--Hb_001018_110 Hb_005269_040 Hb_005269_040 Hb_050454_010--Hb_005269_040 Hb_000629_120 Hb_000629_120 Hb_009646_040--Hb_000629_120 Hb_000161_060 Hb_000161_060 Hb_009646_040--Hb_000161_060 Hb_017110_010 Hb_017110_010 Hb_009646_040--Hb_017110_010 Hb_001700_030 Hb_001700_030 Hb_009646_040--Hb_001700_030 Hb_092337_010 Hb_092337_010 Hb_009646_040--Hb_092337_010 Hb_027380_130 Hb_027380_130 Hb_003571_030--Hb_027380_130 Hb_084646_010 Hb_084646_010 Hb_003571_030--Hb_084646_010 Hb_003571_030--Hb_000483_220 Hb_000207_330 Hb_000207_330 Hb_003571_030--Hb_000207_330 Hb_000646_050 Hb_000646_050 Hb_003571_030--Hb_000646_050 Hb_005396_150 Hb_005396_150 Hb_003571_030--Hb_005396_150 Hb_002445_120 Hb_002445_120 Hb_044736_010--Hb_002445_120 Hb_044736_010--Hb_001018_110 Hb_044736_010--Hb_022833_100 Hb_001018_130 Hb_001018_130 Hb_044736_010--Hb_001018_130 Hb_012322_010 Hb_012322_010 Hb_044736_010--Hb_012322_010 Hb_000665_060 Hb_000665_060 Hb_000483_220--Hb_000665_060 Hb_007416_090 Hb_007416_090 Hb_000483_220--Hb_007416_090 Hb_004607_050 Hb_004607_050 Hb_000483_220--Hb_004607_050 Hb_000260_010 Hb_000260_010 Hb_000483_220--Hb_000260_010 Hb_001163_100 Hb_001163_100 Hb_000483_220--Hb_001163_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8166 6.99145 2.52704 21.4571 4.011 8.58795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0954 6.95026 15.4683 7.9861 6.83933

CAGE analysis