Hb_000482_030

Information

Type transcription factor
Description TF Family: C2H2
Location Contig482: 25759-28695
Sequence    

Annotation

kegg
ID pop:POPTR_0018s05280g
description hypothetical protein
nr
ID XP_011019439.1
description PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Populus euphratica]
swissprot
ID Q8H1F5
description Protein indeterminate-domain 7 OS=Arabidopsis thaliana GN=IDD7 PE=2 SV=1
trembl
ID U5G8R0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s24410g PE=4 SV=1
Gene Ontology
ID GO:0005488
description protein indeterminate-domain 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44767: 25572-28438 , PASA_asmbl_44768: 25811-28479
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000482_030 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Populus euphratica]
2 Hb_000694_080 0.048428688 - - phosphoribulose kinase, putative [Ricinus communis]
3 Hb_000017_210 0.06419911 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
4 Hb_007426_070 0.0682328701 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
5 Hb_000841_040 0.0777069834 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
6 Hb_000111_460 0.078328993 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
7 Hb_008748_050 0.0811988691 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
8 Hb_000012_370 0.081862107 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000483_440 0.082401989 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003090_050 0.0832489236 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
11 Hb_009093_020 0.0868614794 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
12 Hb_087599_010 0.0888592944 - - PREDICTED: tropinone reductase homolog [Solanum tuberosum]
13 Hb_000545_180 0.0900577759 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
14 Hb_176135_010 0.0904339681 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
15 Hb_075050_010 0.0908385287 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
16 Hb_005000_120 0.0913358307 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
17 Hb_001856_240 0.0932710726 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
18 Hb_000101_330 0.0953024618 - - -
19 Hb_011381_120 0.0955650463 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
20 Hb_000450_050 0.0958787253 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000482_030 Hb_000482_030 Hb_000694_080 Hb_000694_080 Hb_000482_030--Hb_000694_080 Hb_000017_210 Hb_000017_210 Hb_000482_030--Hb_000017_210 Hb_007426_070 Hb_007426_070 Hb_000482_030--Hb_007426_070 Hb_000841_040 Hb_000841_040 Hb_000482_030--Hb_000841_040 Hb_000111_460 Hb_000111_460 Hb_000482_030--Hb_000111_460 Hb_008748_050 Hb_008748_050 Hb_000482_030--Hb_008748_050 Hb_000694_080--Hb_000017_210 Hb_087599_010 Hb_087599_010 Hb_000694_080--Hb_087599_010 Hb_000694_080--Hb_007426_070 Hb_000483_440 Hb_000483_440 Hb_000694_080--Hb_000483_440 Hb_000012_370 Hb_000012_370 Hb_000694_080--Hb_000012_370 Hb_000017_210--Hb_000483_440 Hb_000017_210--Hb_007426_070 Hb_004146_030 Hb_004146_030 Hb_000017_210--Hb_004146_030 Hb_005305_070 Hb_005305_070 Hb_000017_210--Hb_005305_070 Hb_007426_070--Hb_000483_440 Hb_007426_070--Hb_004146_030 Hb_000081_110 Hb_000081_110 Hb_007426_070--Hb_000081_110 Hb_003090_050 Hb_003090_050 Hb_000841_040--Hb_003090_050 Hb_009093_020 Hb_009093_020 Hb_000841_040--Hb_009093_020 Hb_000841_040--Hb_000111_460 Hb_011381_120 Hb_011381_120 Hb_000841_040--Hb_011381_120 Hb_001832_180 Hb_001832_180 Hb_000841_040--Hb_001832_180 Hb_004631_020 Hb_004631_020 Hb_000841_040--Hb_004631_020 Hb_000111_460--Hb_003090_050 Hb_000111_460--Hb_008748_050 Hb_001287_070 Hb_001287_070 Hb_000111_460--Hb_001287_070 Hb_005000_120 Hb_005000_120 Hb_000111_460--Hb_005000_120 Hb_000111_460--Hb_011381_120 Hb_086022_020 Hb_086022_020 Hb_008748_050--Hb_086022_020 Hb_176135_010 Hb_176135_010 Hb_008748_050--Hb_176135_010 Hb_008748_050--Hb_003090_050 Hb_000923_030 Hb_000923_030 Hb_008748_050--Hb_000923_030 Hb_008748_050--Hb_000012_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0357921 1.33328 12.612 3.88354 0.00963572 0.00841975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0344083 0 0.745859 31.6946

CAGE analysis