Hb_000482_090

Information

Type -
Description -
Location Contig482: 69550-74239
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24510g
description POPTRDRAFT_717943; hypothetical protein
nr
ID XP_012077283.1
description PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9HDM6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s24510g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44780: 71146-73925
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000482_090 0.0 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]
2 Hb_002005_020 0.0801962498 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004218_110 0.0852993506 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
4 Hb_001959_210 0.0860030892 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
5 Hb_002759_060 0.0872349652 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
6 Hb_004254_120 0.088264243 - - conserved hypothetical protein [Ricinus communis]
7 Hb_172932_010 0.0920549932 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_025240_040 0.0924084293 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
9 Hb_002687_110 0.0924519216 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
10 Hb_064441_010 0.0942420737 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
11 Hb_001369_690 0.0945104406 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
12 Hb_001360_050 0.094685158 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
13 Hb_024185_020 0.0958017868 - - -
14 Hb_000676_150 0.0958444109 - - 50S ribosomal protein L7/L12, putative [Ricinus communis]
15 Hb_001235_030 0.0966930592 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
16 Hb_114336_020 0.0977841101 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
17 Hb_000029_020 0.0981225194 - - Vesicle-associated membrane protein, putative [Ricinus communis]
18 Hb_127552_030 0.0988421346 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
19 Hb_001009_170 0.0992073466 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
20 Hb_005490_030 0.0996860579 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000482_090 Hb_000482_090 Hb_002005_020 Hb_002005_020 Hb_000482_090--Hb_002005_020 Hb_004218_110 Hb_004218_110 Hb_000482_090--Hb_004218_110 Hb_001959_210 Hb_001959_210 Hb_000482_090--Hb_001959_210 Hb_002759_060 Hb_002759_060 Hb_000482_090--Hb_002759_060 Hb_004254_120 Hb_004254_120 Hb_000482_090--Hb_004254_120 Hb_172932_010 Hb_172932_010 Hb_000482_090--Hb_172932_010 Hb_002005_020--Hb_004218_110 Hb_000023_090 Hb_000023_090 Hb_002005_020--Hb_000023_090 Hb_002005_020--Hb_002759_060 Hb_011953_020 Hb_011953_020 Hb_002005_020--Hb_011953_020 Hb_000567_120 Hb_000567_120 Hb_002005_020--Hb_000567_120 Hb_001519_050 Hb_001519_050 Hb_002005_020--Hb_001519_050 Hb_004218_110--Hb_002759_060 Hb_025240_040 Hb_025240_040 Hb_004218_110--Hb_025240_040 Hb_001369_690 Hb_001369_690 Hb_004218_110--Hb_001369_690 Hb_004218_110--Hb_004254_120 Hb_000120_460 Hb_000120_460 Hb_004218_110--Hb_000120_460 Hb_001009_170 Hb_001009_170 Hb_001959_210--Hb_001009_170 Hb_000483_200 Hb_000483_200 Hb_001959_210--Hb_000483_200 Hb_006400_060 Hb_006400_060 Hb_001959_210--Hb_006400_060 Hb_127552_030 Hb_127552_030 Hb_001959_210--Hb_127552_030 Hb_006400_030 Hb_006400_030 Hb_001959_210--Hb_006400_030 Hb_024185_020 Hb_024185_020 Hb_001959_210--Hb_024185_020 Hb_001833_110 Hb_001833_110 Hb_002759_060--Hb_001833_110 Hb_027073_040 Hb_027073_040 Hb_002759_060--Hb_027073_040 Hb_003996_020 Hb_003996_020 Hb_002759_060--Hb_003996_020 Hb_002759_060--Hb_025240_040 Hb_000058_060 Hb_000058_060 Hb_002759_060--Hb_000058_060 Hb_032202_190 Hb_032202_190 Hb_004254_120--Hb_032202_190 Hb_005618_170 Hb_005618_170 Hb_004254_120--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_004254_120--Hb_005305_080 Hb_000206_210 Hb_000206_210 Hb_004254_120--Hb_000206_210 Hb_000876_070 Hb_000876_070 Hb_004254_120--Hb_000876_070 Hb_000928_210 Hb_000928_210 Hb_004254_120--Hb_000928_210 Hb_011534_030 Hb_011534_030 Hb_172932_010--Hb_011534_030 Hb_001454_190 Hb_001454_190 Hb_172932_010--Hb_001454_190 Hb_000617_150 Hb_000617_150 Hb_172932_010--Hb_000617_150 Hb_009113_070 Hb_009113_070 Hb_172932_010--Hb_009113_070 Hb_086639_030 Hb_086639_030 Hb_172932_010--Hb_086639_030 Hb_002235_280 Hb_002235_280 Hb_172932_010--Hb_002235_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.54515 0.660777 1.0063 1.47024 2.31649 2.911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.19695 3.1668 4.74151 2.62313 1.67272

CAGE analysis