Hb_000482_100

Information

Type -
Description -
Location Contig482: 115988-116405
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000482_100 0.0 - - -
2 Hb_189099_010 0.0071945709 - - PREDICTED: uncharacterized protein At1g04910-like [Citrus sinensis]
3 Hb_001629_070 0.0161620172 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
4 Hb_068578_010 0.0164212584 - - PREDICTED: uncharacterized protein LOC105789577 [Gossypium raimondii]
5 Hb_002982_060 0.0204695939 - - hypothetical protein JCGZ_19604 [Jatropha curcas]
6 Hb_009813_040 0.0268530005 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
7 Hb_099586_010 0.0281196438 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
8 Hb_000001_030 0.0306382394 - - polyprotein [Citrus endogenous pararetrovirus]
9 Hb_002656_040 0.030865253 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
10 Hb_084299_010 0.0311080573 - - PREDICTED: uncharacterized protein LOC104233139 [Nicotiana sylvestris]
11 Hb_008269_020 0.0317018757 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_000118_050 0.0317693183 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
13 Hb_065059_010 0.0320271372 - - PREDICTED: uncharacterized protein LOC104907634 [Beta vulgaris subsp. vulgaris]
14 Hb_031964_010 0.0336982246 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
15 Hb_000493_110 0.0372432879 - - hypothetical protein EUGRSUZ_A02264 [Eucalyptus grandis]
16 Hb_072825_010 0.0388251526 - - Uncharacterized protein TCM_023328 [Theobroma cacao]
17 Hb_000283_160 0.0422852318 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
18 Hb_031104_010 0.0454854156 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
19 Hb_048482_010 0.0480295074 - - -
20 Hb_104984_010 0.0527233693 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]

Gene co-expression network

sample Hb_000482_100 Hb_000482_100 Hb_189099_010 Hb_189099_010 Hb_000482_100--Hb_189099_010 Hb_001629_070 Hb_001629_070 Hb_000482_100--Hb_001629_070 Hb_068578_010 Hb_068578_010 Hb_000482_100--Hb_068578_010 Hb_002982_060 Hb_002982_060 Hb_000482_100--Hb_002982_060 Hb_009813_040 Hb_009813_040 Hb_000482_100--Hb_009813_040 Hb_099586_010 Hb_099586_010 Hb_000482_100--Hb_099586_010 Hb_189099_010--Hb_001629_070 Hb_189099_010--Hb_068578_010 Hb_189099_010--Hb_002982_060 Hb_189099_010--Hb_009813_040 Hb_189099_010--Hb_099586_010 Hb_001629_070--Hb_068578_010 Hb_001629_070--Hb_002982_060 Hb_001629_070--Hb_009813_040 Hb_001629_070--Hb_099586_010 Hb_000001_030 Hb_000001_030 Hb_001629_070--Hb_000001_030 Hb_068578_010--Hb_002982_060 Hb_068578_010--Hb_009813_040 Hb_068578_010--Hb_099586_010 Hb_068578_010--Hb_000001_030 Hb_002982_060--Hb_009813_040 Hb_002982_060--Hb_099586_010 Hb_002982_060--Hb_000001_030 Hb_002656_040 Hb_002656_040 Hb_002982_060--Hb_002656_040 Hb_009813_040--Hb_099586_010 Hb_009813_040--Hb_000001_030 Hb_009813_040--Hb_002656_040 Hb_084299_010 Hb_084299_010 Hb_009813_040--Hb_084299_010 Hb_008269_020 Hb_008269_020 Hb_009813_040--Hb_008269_020 Hb_000118_050 Hb_000118_050 Hb_009813_040--Hb_000118_050 Hb_099586_010--Hb_000001_030 Hb_099586_010--Hb_002656_040 Hb_099586_010--Hb_084299_010 Hb_099586_010--Hb_008269_020 Hb_099586_010--Hb_000118_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.128204 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.414522

CAGE analysis