Hb_000482_110

Information

Type transcription factor
Description TF Family: NAC
Location Contig482: 132640-137003
Sequence    

Annotation

kegg
ID rcu:RCOM_1341240
description transcription factor, putative
nr
ID XP_002515112.1
description transcription factor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMX3
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1341240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44781: 135997-136097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000482_110 0.0 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
2 Hb_002400_390 0.0918930139 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
3 Hb_004032_060 0.0970078975 - - elongation factor 1 gamma-like protein, partial [Ipomoea nil]
4 Hb_004447_030 0.098953426 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
5 Hb_000265_150 0.1123188529 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
6 Hb_000920_280 0.1126047698 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
7 Hb_010968_010 0.1133835928 - - Golgi snare 12 isoform 1 [Theobroma cacao]
8 Hb_000529_080 0.1141005002 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
9 Hb_017259_010 0.1148705628 - - -
10 Hb_001504_150 0.1160241433 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
11 Hb_001951_260 0.1172143791 - - 60S ribosomal protein L32, putative [Ricinus communis]
12 Hb_000211_110 0.1212505285 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
13 Hb_000205_120 0.1214788475 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
14 Hb_006096_040 0.1223315804 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
15 Hb_009838_130 0.1226522142 - - hypothetical protein CISIN_1g010403mg [Citrus sinensis]
16 Hb_003091_010 0.1234402666 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
17 Hb_000116_110 0.1243880792 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
18 Hb_001663_110 0.1245620835 - - RNA binding protein, putative [Ricinus communis]
19 Hb_000661_160 0.1258319141 - - hexokinase [Manihot esculenta]
20 Hb_001894_030 0.126839183 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]

Gene co-expression network

sample Hb_000482_110 Hb_000482_110 Hb_002400_390 Hb_002400_390 Hb_000482_110--Hb_002400_390 Hb_004032_060 Hb_004032_060 Hb_000482_110--Hb_004032_060 Hb_004447_030 Hb_004447_030 Hb_000482_110--Hb_004447_030 Hb_000265_150 Hb_000265_150 Hb_000482_110--Hb_000265_150 Hb_000920_280 Hb_000920_280 Hb_000482_110--Hb_000920_280 Hb_010968_010 Hb_010968_010 Hb_000482_110--Hb_010968_010 Hb_004096_170 Hb_004096_170 Hb_002400_390--Hb_004096_170 Hb_002400_390--Hb_000265_150 Hb_008406_160 Hb_008406_160 Hb_002400_390--Hb_008406_160 Hb_004722_060 Hb_004722_060 Hb_002400_390--Hb_004722_060 Hb_005015_010 Hb_005015_010 Hb_002400_390--Hb_005015_010 Hb_000307_170 Hb_000307_170 Hb_004032_060--Hb_000307_170 Hb_001951_260 Hb_001951_260 Hb_004032_060--Hb_001951_260 Hb_004032_050 Hb_004032_050 Hb_004032_060--Hb_004032_050 Hb_000290_020 Hb_000290_020 Hb_004032_060--Hb_000290_020 Hb_025236_040 Hb_025236_040 Hb_004032_060--Hb_025236_040 Hb_000205_120 Hb_000205_120 Hb_004447_030--Hb_000205_120 Hb_001663_110 Hb_001663_110 Hb_004447_030--Hb_001663_110 Hb_000976_270 Hb_000976_270 Hb_004447_030--Hb_000976_270 Hb_000347_080 Hb_000347_080 Hb_004447_030--Hb_000347_080 Hb_004447_030--Hb_000265_150 Hb_000529_080 Hb_000529_080 Hb_004447_030--Hb_000529_080 Hb_000265_150--Hb_000205_120 Hb_012305_070 Hb_012305_070 Hb_000265_150--Hb_012305_070 Hb_000265_150--Hb_004722_060 Hb_000265_150--Hb_000529_080 Hb_000768_050 Hb_000768_050 Hb_000265_150--Hb_000768_050 Hb_000265_150--Hb_008406_160 Hb_006623_020 Hb_006623_020 Hb_000920_280--Hb_006623_020 Hb_003091_010 Hb_003091_010 Hb_000920_280--Hb_003091_010 Hb_000211_110 Hb_000211_110 Hb_000920_280--Hb_000211_110 Hb_000923_040 Hb_000923_040 Hb_000920_280--Hb_000923_040 Hb_003142_070 Hb_003142_070 Hb_000920_280--Hb_003142_070 Hb_000920_280--Hb_010968_010 Hb_000676_050 Hb_000676_050 Hb_010968_010--Hb_000676_050 Hb_010968_010--Hb_000205_120 Hb_002292_010 Hb_002292_010 Hb_010968_010--Hb_002292_010 Hb_001504_150 Hb_001504_150 Hb_010968_010--Hb_001504_150 Hb_002784_050 Hb_002784_050 Hb_010968_010--Hb_002784_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.29889 1.0615 0.876058 0.680911 3.09945 1.78637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87877 1.45953 0.531562 0.305363 0.118466

CAGE analysis