Hb_000482_160

Information

Type -
Description -
Location Contig482: 222853-223347
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24550g
description POPTRDRAFT_763255; hypothetical protein
nr
ID KDP34099.1
description hypothetical protein JCGZ_07670 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQK0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07670 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44786: 222840-223005 , PASA_asmbl_44787: 223118-223443
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000482_160 0.0 - - hypothetical protein JCGZ_07670 [Jatropha curcas]
2 Hb_001864_050 0.0654098683 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
3 Hb_001338_120 0.0812785262 - - hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas]
4 Hb_002805_200 0.0891001871 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
5 Hb_000281_120 0.0937564815 - - protein binding protein, putative [Ricinus communis]
6 Hb_005305_140 0.0942853548 - - unknown [Populus trichocarpa]
7 Hb_003651_030 0.0965431337 - - lyase, putative [Ricinus communis]
8 Hb_001006_150 0.0970168609 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
9 Hb_078954_030 0.0981807537 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000445_270 0.0996547847 - - ATP binding protein, putative [Ricinus communis]
11 Hb_180985_010 0.0998649647 - - NDH-dependent cyclic electron flow 1 isoform 1 [Theobroma cacao]
12 Hb_001662_090 0.1037669669 - - PREDICTED: thiosulfate sulfurtransferase 16, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_000340_280 0.1039713573 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004109_140 0.1040647865 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000115_020 0.1044568152 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
16 Hb_003921_020 0.1079697804 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
17 Hb_000937_010 0.1085542335 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005527_070 0.1106565764 - - short-chain dehydrogenase/reductase family protein [Populus trichocarpa]
19 Hb_000088_230 0.1107280423 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
20 Hb_004712_220 0.111315339 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000482_160 Hb_000482_160 Hb_001864_050 Hb_001864_050 Hb_000482_160--Hb_001864_050 Hb_001338_120 Hb_001338_120 Hb_000482_160--Hb_001338_120 Hb_002805_200 Hb_002805_200 Hb_000482_160--Hb_002805_200 Hb_000281_120 Hb_000281_120 Hb_000482_160--Hb_000281_120 Hb_005305_140 Hb_005305_140 Hb_000482_160--Hb_005305_140 Hb_003651_030 Hb_003651_030 Hb_000482_160--Hb_003651_030 Hb_001864_050--Hb_002805_200 Hb_001864_050--Hb_001338_120 Hb_001006_150 Hb_001006_150 Hb_001864_050--Hb_001006_150 Hb_001864_050--Hb_000281_120 Hb_001864_050--Hb_005305_140 Hb_001338_120--Hb_001006_150 Hb_005329_010 Hb_005329_010 Hb_001338_120--Hb_005329_010 Hb_000359_050 Hb_000359_050 Hb_001338_120--Hb_000359_050 Hb_001338_120--Hb_000281_120 Hb_000445_270 Hb_000445_270 Hb_001338_120--Hb_000445_270 Hb_002805_200--Hb_000281_120 Hb_002805_200--Hb_003651_030 Hb_000340_280 Hb_000340_280 Hb_002805_200--Hb_000340_280 Hb_078954_030 Hb_078954_030 Hb_002805_200--Hb_078954_030 Hb_001233_050 Hb_001233_050 Hb_002805_200--Hb_001233_050 Hb_000281_120--Hb_003651_030 Hb_003573_030 Hb_003573_030 Hb_000281_120--Hb_003573_030 Hb_000210_030 Hb_000210_030 Hb_000281_120--Hb_000210_030 Hb_000281_120--Hb_000340_280 Hb_003921_020 Hb_003921_020 Hb_000281_120--Hb_003921_020 Hb_004109_140 Hb_004109_140 Hb_005305_140--Hb_004109_140 Hb_000386_010 Hb_000386_010 Hb_005305_140--Hb_000386_010 Hb_002025_220 Hb_002025_220 Hb_005305_140--Hb_002025_220 Hb_001662_090 Hb_001662_090 Hb_005305_140--Hb_001662_090 Hb_000834_170 Hb_000834_170 Hb_005305_140--Hb_000834_170 Hb_003651_030--Hb_003573_030 Hb_003651_030--Hb_000210_030 Hb_003651_030--Hb_000340_280 Hb_003651_030--Hb_000359_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.352264 3.29541 0.488037 0 0.0523266
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.99925

CAGE analysis