Hb_000483_100

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig483: 89922-90911
Sequence    

Annotation

kegg
ID pop:POPTR_0017s11920g
description POPTRDRAFT_259091; hypothetical protein
nr
ID XP_012084702.1
description PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
swissprot
ID Q9LXG0
description Zinc-finger homeodomain protein 8 OS=Arabidopsis thaliana GN=ZHD8 PE=1 SV=1
trembl
ID B9IJX6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s11920g PE=4 SV=2
Gene Ontology
ID GO:0003677
description zinc-finger homeodomain protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44805: 89639-91286
cDNA
(Sanger)
(ID:Location)		 035_P24.ab1: 89639-90365 , 051_H17.ab1: 89817-90530

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_100 0.0 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
2 Hb_004545_120 0.1484622542 - - PREDICTED: uncharacterized protein LOC105647604 [Jatropha curcas]
3 Hb_002343_010 0.1493890729 - - amino acid binding protein, putative [Ricinus communis]
4 Hb_001054_070 0.1501481805 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
5 Hb_000016_200 0.1561552591 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001269_470 0.1685090768 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
7 Hb_002890_300 0.1690863216 - - abhydrolase domain containing, putative [Ricinus communis]
8 Hb_003462_180 0.1692428955 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
9 Hb_000116_020 0.173688993 - - PREDICTED: serine acetyltransferase 2-like isoform X1 [Jatropha curcas]
10 Hb_002603_110 0.1739861407 - - PREDICTED: uncharacterized protein LOC105646325 [Jatropha curcas]
11 Hb_000188_060 0.1773690868 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
12 Hb_000175_050 0.1834363614 - - -
13 Hb_000235_070 0.1845054808 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
14 Hb_001629_090 0.1856659352 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000368_120 0.1883159449 - - PREDICTED: uncharacterized protein LOC105633862 [Jatropha curcas]
16 Hb_001376_060 0.1889191124 - - PREDICTED: probable serine/threonine-protein kinase abkC isoform X2 [Jatropha curcas]
17 Hb_033363_050 0.1901852173 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 isoform X2 [Jatropha curcas]
18 Hb_000506_110 0.1902245274 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Jatropha curcas]
19 Hb_001711_120 0.1916976434 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
20 Hb_007904_040 0.1919298291 - - PREDICTED: uncharacterized protein LOC105644727 [Jatropha curcas]

Gene co-expression network

sample Hb_000483_100 Hb_000483_100 Hb_004545_120 Hb_004545_120 Hb_000483_100--Hb_004545_120 Hb_002343_010 Hb_002343_010 Hb_000483_100--Hb_002343_010 Hb_001054_070 Hb_001054_070 Hb_000483_100--Hb_001054_070 Hb_000016_200 Hb_000016_200 Hb_000483_100--Hb_000016_200 Hb_001269_470 Hb_001269_470 Hb_000483_100--Hb_001269_470 Hb_002890_300 Hb_002890_300 Hb_000483_100--Hb_002890_300 Hb_000011_560 Hb_000011_560 Hb_004545_120--Hb_000011_560 Hb_000334_050 Hb_000334_050 Hb_004545_120--Hb_000334_050 Hb_000235_070 Hb_000235_070 Hb_004545_120--Hb_000235_070 Hb_000307_070 Hb_000307_070 Hb_004545_120--Hb_000307_070 Hb_011476_030 Hb_011476_030 Hb_004545_120--Hb_011476_030 Hb_015967_030 Hb_015967_030 Hb_004545_120--Hb_015967_030 Hb_002343_010--Hb_001054_070 Hb_002774_200 Hb_002774_200 Hb_002343_010--Hb_002774_200 Hb_012762_040 Hb_012762_040 Hb_002343_010--Hb_012762_040 Hb_001616_110 Hb_001616_110 Hb_002343_010--Hb_001616_110 Hb_001269_370 Hb_001269_370 Hb_002343_010--Hb_001269_370 Hb_121089_020 Hb_121089_020 Hb_002343_010--Hb_121089_020 Hb_001054_070--Hb_121089_020 Hb_001054_070--Hb_001269_370 Hb_002259_170 Hb_002259_170 Hb_001054_070--Hb_002259_170 Hb_000506_110 Hb_000506_110 Hb_001054_070--Hb_000506_110 Hb_008120_040 Hb_008120_040 Hb_001054_070--Hb_008120_040 Hb_000188_060 Hb_000188_060 Hb_000016_200--Hb_000188_060 Hb_005305_020 Hb_005305_020 Hb_000016_200--Hb_005305_020 Hb_000175_050 Hb_000175_050 Hb_000016_200--Hb_000175_050 Hb_011053_030 Hb_011053_030 Hb_000016_200--Hb_011053_030 Hb_005000_080 Hb_005000_080 Hb_000016_200--Hb_005000_080 Hb_020378_060 Hb_020378_060 Hb_000016_200--Hb_020378_060 Hb_003181_060 Hb_003181_060 Hb_001269_470--Hb_003181_060 Hb_001711_120 Hb_001711_120 Hb_001269_470--Hb_001711_120 Hb_027298_010 Hb_027298_010 Hb_001269_470--Hb_027298_010 Hb_009780_050 Hb_009780_050 Hb_001269_470--Hb_009780_050 Hb_001322_230 Hb_001322_230 Hb_001269_470--Hb_001322_230 Hb_001373_130 Hb_001373_130 Hb_001269_470--Hb_001373_130 Hb_032568_010 Hb_032568_010 Hb_002890_300--Hb_032568_010 Hb_008179_030 Hb_008179_030 Hb_002890_300--Hb_008179_030 Hb_002890_300--Hb_000011_560 Hb_000116_020 Hb_000116_020 Hb_002890_300--Hb_000116_020 Hb_006153_150 Hb_006153_150 Hb_002890_300--Hb_006153_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.74752 20.7342 29.0541 16.5131 0.923562 0.858813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.64468 22.8431 11.5809 5.2274 38.1995

CAGE analysis