Hb_000483_110

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig483: 98070-99188
Sequence    

Annotation

kegg
ID tcc:TCM_018545
description Mini zinc finger 2 isoform 1
nr
ID XP_007032531.1
description Mini zinc finger 2 isoform 2, partial [Theobroma cacao]
swissprot
ID Q9LJW5
description Mini zinc finger protein 2 OS=Arabidopsis thaliana GN=MIF2 PE=1 SV=1
trembl
ID A0A061EGD2
description Mini zinc finger 2 isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_018545 PE=4 SV=1
Gene Ontology
ID GO:0003677
description mini zinc finger protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_110 0.0 transcription factor TF Family: zf-HD Mini zinc finger 2 isoform 2, partial [Theobroma cacao]
2 Hb_011618_040 0.204066201 - - conserved hypothetical protein [Ricinus communis]
3 Hb_058116_010 0.2478477623 - - Cycloartenol synthase, putative [Ricinus communis]
4 Hb_002110_260 0.2489449922 - - zinc finger protein, putative [Ricinus communis]
5 Hb_000556_110 0.249276845 - - hypothetical protein POPTR_0014s06790g [Populus trichocarpa]
6 Hb_000243_110 0.2493255301 - - PREDICTED: WAT1-related protein At3g53210-like [Jatropha curcas]
7 Hb_096811_010 0.2518503232 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At1g61190 [Vitis vinifera]
8 Hb_005841_080 0.2557820715 - - hypothetical protein POPTR_0018s11370g [Populus trichocarpa]
9 Hb_001454_340 0.2570382489 - - ATDI21 [Manihot esculenta]
10 Hb_000067_010 0.2591184158 - - hypothetical protein B456_002G147500 [Gossypium raimondii]
11 Hb_001687_050 0.2616318354 - - -
12 Hb_006711_010 0.2648562529 - - cytoplasmic dynein light chain, putative [Ricinus communis]
13 Hb_007382_050 0.2748685623 - - PREDICTED: uncharacterized protein LOC105645009 [Jatropha curcas]
14 Hb_005539_170 0.2769416848 - - PREDICTED: uncharacterized protein LOC101502180 [Cicer arietinum]
15 Hb_001545_030 0.2800691808 - - -
16 Hb_129279_020 0.2801152737 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
17 Hb_003677_010 0.2820887856 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
18 Hb_005539_160 0.2832037432 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
19 Hb_000025_020 0.2872379461 - - PREDICTED: cytochrome P450 71B34-like [Jatropha curcas]
20 Hb_001951_030 0.2884066978 - - hypothetical protein JCGZ_04584 [Jatropha curcas]

Gene co-expression network

sample Hb_000483_110 Hb_000483_110 Hb_011618_040 Hb_011618_040 Hb_000483_110--Hb_011618_040 Hb_058116_010 Hb_058116_010 Hb_000483_110--Hb_058116_010 Hb_002110_260 Hb_002110_260 Hb_000483_110--Hb_002110_260 Hb_000556_110 Hb_000556_110 Hb_000483_110--Hb_000556_110 Hb_000243_110 Hb_000243_110 Hb_000483_110--Hb_000243_110 Hb_096811_010 Hb_096811_010 Hb_000483_110--Hb_096811_010 Hb_011618_040--Hb_000556_110 Hb_000670_110 Hb_000670_110 Hb_011618_040--Hb_000670_110 Hb_000106_070 Hb_000106_070 Hb_011618_040--Hb_000106_070 Hb_001454_340 Hb_001454_340 Hb_011618_040--Hb_001454_340 Hb_003119_070 Hb_003119_070 Hb_011618_040--Hb_003119_070 Hb_007416_150 Hb_007416_150 Hb_011618_040--Hb_007416_150 Hb_006711_010 Hb_006711_010 Hb_058116_010--Hb_006711_010 Hb_011819_030 Hb_011819_030 Hb_058116_010--Hb_011819_030 Hb_000365_300 Hb_000365_300 Hb_058116_010--Hb_000365_300 Hb_003074_070 Hb_003074_070 Hb_058116_010--Hb_003074_070 Hb_002743_030 Hb_002743_030 Hb_058116_010--Hb_002743_030 Hb_002422_040 Hb_002422_040 Hb_058116_010--Hb_002422_040 Hb_002043_010 Hb_002043_010 Hb_002110_260--Hb_002043_010 Hb_000384_050 Hb_000384_050 Hb_002110_260--Hb_000384_050 Hb_001946_150 Hb_001946_150 Hb_002110_260--Hb_001946_150 Hb_012565_080 Hb_012565_080 Hb_002110_260--Hb_012565_080 Hb_000645_210 Hb_000645_210 Hb_002110_260--Hb_000645_210 Hb_000928_040 Hb_000928_040 Hb_002110_260--Hb_000928_040 Hb_004195_110 Hb_004195_110 Hb_000556_110--Hb_004195_110 Hb_009823_010 Hb_009823_010 Hb_000556_110--Hb_009823_010 Hb_002311_370 Hb_002311_370 Hb_000556_110--Hb_002311_370 Hb_000098_310 Hb_000098_310 Hb_000556_110--Hb_000098_310 Hb_000025_020 Hb_000025_020 Hb_000556_110--Hb_000025_020 Hb_000011_480 Hb_000011_480 Hb_000243_110--Hb_000011_480 Hb_004894_010 Hb_004894_010 Hb_000243_110--Hb_004894_010 Hb_037960_010 Hb_037960_010 Hb_000243_110--Hb_037960_010 Hb_000243_110--Hb_000025_020 Hb_001410_100 Hb_001410_100 Hb_000243_110--Hb_001410_100 Hb_000093_150 Hb_000093_150 Hb_096811_010--Hb_000093_150 Hb_012553_020 Hb_012553_020 Hb_096811_010--Hb_012553_020 Hb_019893_010 Hb_019893_010 Hb_096811_010--Hb_019893_010 Hb_000077_330 Hb_000077_330 Hb_096811_010--Hb_000077_330 Hb_000343_100 Hb_000343_100 Hb_096811_010--Hb_000343_100 Hb_008749_090 Hb_008749_090 Hb_096811_010--Hb_008749_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.378665 9.77154 0 0.402667 0.86441 3.76854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.173656 0.136565 2.07908 17.3476 0.092369

CAGE analysis