Hb_000483_160

Information

Type -
Description -
Location Contig483: 133326-135451
Sequence    

Annotation

kegg
ID rcu:RCOM_0836350
description 60S ribosomal protein L34, putative
nr
ID XP_012067636.1
description PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
swissprot
ID P40590
description 60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1
trembl
ID A0A067LAS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15601 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44809: 133326-135503
cDNA
(Sanger)
(ID:Location)		 006_C14.ab1: 133332-135480 , 009_A16.ab1: 133335-135503 , 024_G12.ab1: 133335-135457 , 036_A01.ab1: 133326-135429

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_160 0.0 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
2 Hb_004297_100 0.056284911 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
3 Hb_000260_050 0.0692479199 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
4 Hb_001019_090 0.0705589144 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
5 Hb_000417_110 0.0753949411 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
6 Hb_002477_240 0.0770252247 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
7 Hb_004899_220 0.077329895 - - PREDICTED: adrenodoxin-like protein 2, mitochondrial [Jatropha curcas]
8 Hb_003001_060 0.0790336973 - - wound-responsive family protein [Populus trichocarpa]
9 Hb_001754_150 0.0836952234 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
10 Hb_000190_060 0.0846273 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
11 Hb_000531_020 0.0868748026 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
12 Hb_005611_010 0.08789446 - - PREDICTED: protein prune homolog [Jatropha curcas]
13 Hb_007747_090 0.0897414854 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
14 Hb_000025_530 0.0906660069 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
15 Hb_024650_050 0.0910535276 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
16 Hb_001584_070 0.0921496496 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001279_070 0.0929905361 - - PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
18 Hb_000152_430 0.0930774373 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
19 Hb_002893_060 0.0949853123 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
20 Hb_003058_070 0.0957906614 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]

Gene co-expression network

sample Hb_000483_160 Hb_000483_160 Hb_004297_100 Hb_004297_100 Hb_000483_160--Hb_004297_100 Hb_000260_050 Hb_000260_050 Hb_000483_160--Hb_000260_050 Hb_001019_090 Hb_001019_090 Hb_000483_160--Hb_001019_090 Hb_000417_110 Hb_000417_110 Hb_000483_160--Hb_000417_110 Hb_002477_240 Hb_002477_240 Hb_000483_160--Hb_002477_240 Hb_004899_220 Hb_004899_220 Hb_000483_160--Hb_004899_220 Hb_004297_100--Hb_001019_090 Hb_005611_010 Hb_005611_010 Hb_004297_100--Hb_005611_010 Hb_000200_210 Hb_000200_210 Hb_004297_100--Hb_000200_210 Hb_000617_320 Hb_000617_320 Hb_004297_100--Hb_000617_320 Hb_023732_070 Hb_023732_070 Hb_004297_100--Hb_023732_070 Hb_007747_090 Hb_007747_090 Hb_000260_050--Hb_007747_090 Hb_000260_050--Hb_004899_220 Hb_000260_050--Hb_002477_240 Hb_000977_080 Hb_000977_080 Hb_000260_050--Hb_000977_080 Hb_001754_150 Hb_001754_150 Hb_000260_050--Hb_001754_150 Hb_007166_050 Hb_007166_050 Hb_001019_090--Hb_007166_050 Hb_001019_090--Hb_000617_320 Hb_000152_430 Hb_000152_430 Hb_001019_090--Hb_000152_430 Hb_001019_090--Hb_001754_150 Hb_000634_050 Hb_000634_050 Hb_000417_110--Hb_000634_050 Hb_001584_070 Hb_001584_070 Hb_000417_110--Hb_001584_070 Hb_001951_110 Hb_001951_110 Hb_000417_110--Hb_001951_110 Hb_000798_030 Hb_000798_030 Hb_000417_110--Hb_000798_030 Hb_003058_070 Hb_003058_070 Hb_000417_110--Hb_003058_070 Hb_003001_060 Hb_003001_060 Hb_000417_110--Hb_003001_060 Hb_002477_240--Hb_001754_150 Hb_042202_010 Hb_042202_010 Hb_002477_240--Hb_042202_010 Hb_004738_080 Hb_004738_080 Hb_002477_240--Hb_004738_080 Hb_000703_140 Hb_000703_140 Hb_002477_240--Hb_000703_140 Hb_009767_120 Hb_009767_120 Hb_002477_240--Hb_009767_120 Hb_052135_030 Hb_052135_030 Hb_004899_220--Hb_052135_030 Hb_000025_530 Hb_000025_530 Hb_004899_220--Hb_000025_530 Hb_004899_220--Hb_007747_090 Hb_011805_080 Hb_011805_080 Hb_004899_220--Hb_011805_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
753.683 175.067 188.11 192.95 656.245 909.986
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
821.871 1546.18 484.709 174.658 62.4746

CAGE analysis