Hb_000483_180

Information

Type -
Description -
Location Contig483: 164129-166445
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_180 0.0 - - -
2 Hb_119886_040 0.1146359734 - - -
3 Hb_009558_040 0.1417859141 transcription factor TF Family: MYB hypothetical protein PHAVU_008G102000g [Phaseolus vulgaris]
4 Hb_000488_010 0.15112908 - - 18.1 kDa class I heat shock protein [Jatropha curcas]
5 Hb_002311_230 0.157935223 - - -
6 Hb_000024_070 0.1582233427 - - PREDICTED: dnaJ homolog subfamily B member 6-like isoform X1 [Jatropha curcas]
7 Hb_000181_360 0.1598884979 - - PREDICTED: uncharacterized protein LOC105644273 [Jatropha curcas]
8 Hb_000011_210 0.1646265205 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
9 Hb_003236_010 0.166411835 - - PREDICTED: uncharacterized protein LOC105635957 [Jatropha curcas]
10 Hb_001433_020 0.1688373666 - - PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]
11 Hb_001522_010 0.1691424406 - - PREDICTED: nucleolar protein 14 isoform X1 [Jatropha curcas]
12 Hb_002084_040 0.170457391 - - PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Jatropha curcas]
13 Hb_000317_150 0.171203806 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
14 Hb_011798_040 0.1737324794 - - hypothetical protein ZEAMMB73_778895 [Zea mays]
15 Hb_004899_030 0.1759811439 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
16 Hb_002188_090 0.1765199379 - - PREDICTED: pre-mRNA-processing protein 40A isoform X1 [Jatropha curcas]
17 Hb_011639_010 0.1779727576 - - -
18 Hb_000770_030 0.1783909451 - - -
19 Hb_002301_270 0.1788375388 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
20 Hb_000735_100 0.1791827377 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]

Gene co-expression network

sample Hb_000483_180 Hb_000483_180 Hb_119886_040 Hb_119886_040 Hb_000483_180--Hb_119886_040 Hb_009558_040 Hb_009558_040 Hb_000483_180--Hb_009558_040 Hb_000488_010 Hb_000488_010 Hb_000483_180--Hb_000488_010 Hb_002311_230 Hb_002311_230 Hb_000483_180--Hb_002311_230 Hb_000024_070 Hb_000024_070 Hb_000483_180--Hb_000024_070 Hb_000181_360 Hb_000181_360 Hb_000483_180--Hb_000181_360 Hb_008556_020 Hb_008556_020 Hb_119886_040--Hb_008556_020 Hb_119886_040--Hb_002311_230 Hb_007223_010 Hb_007223_010 Hb_119886_040--Hb_007223_010 Hb_011639_010 Hb_011639_010 Hb_119886_040--Hb_011639_010 Hb_005962_010 Hb_005962_010 Hb_119886_040--Hb_005962_010 Hb_011512_060 Hb_011512_060 Hb_009558_040--Hb_011512_060 Hb_000317_150 Hb_000317_150 Hb_009558_040--Hb_000317_150 Hb_027073_060 Hb_027073_060 Hb_009558_040--Hb_027073_060 Hb_002499_070 Hb_002499_070 Hb_009558_040--Hb_002499_070 Hb_007885_070 Hb_007885_070 Hb_009558_040--Hb_007885_070 Hb_003540_160 Hb_003540_160 Hb_009558_040--Hb_003540_160 Hb_026198_040 Hb_026198_040 Hb_000488_010--Hb_026198_040 Hb_029223_050 Hb_029223_050 Hb_000488_010--Hb_029223_050 Hb_030827_060 Hb_030827_060 Hb_000488_010--Hb_030827_060 Hb_000538_010 Hb_000538_010 Hb_000488_010--Hb_000538_010 Hb_000422_110 Hb_000422_110 Hb_000488_010--Hb_000422_110 Hb_002311_230--Hb_005962_010 Hb_007044_010 Hb_007044_010 Hb_002311_230--Hb_007044_010 Hb_002311_230--Hb_008556_020 Hb_002311_230--Hb_011639_010 Hb_003216_120 Hb_003216_120 Hb_000024_070--Hb_003216_120 Hb_000363_380 Hb_000363_380 Hb_000024_070--Hb_000363_380 Hb_002708_020 Hb_002708_020 Hb_000024_070--Hb_002708_020 Hb_002612_010 Hb_002612_010 Hb_000024_070--Hb_002612_010 Hb_008246_030 Hb_008246_030 Hb_000024_070--Hb_008246_030 Hb_002686_330 Hb_002686_330 Hb_000024_070--Hb_002686_330 Hb_001231_030 Hb_001231_030 Hb_000181_360--Hb_001231_030 Hb_000327_080 Hb_000327_080 Hb_000181_360--Hb_000327_080 Hb_004899_070 Hb_004899_070 Hb_000181_360--Hb_004899_070 Hb_000265_250 Hb_000265_250 Hb_000181_360--Hb_000265_250 Hb_000062_470 Hb_000062_470 Hb_000181_360--Hb_000062_470 Hb_000753_100 Hb_000753_100 Hb_000181_360--Hb_000753_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.55773 6.52233 2.26569 0.59609 10.8382 5.48285
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.2537 0.903841 0.679474 1.28946 3.43983

CAGE analysis