Hb_000483_200

Information

Type -
Description -
Location Contig483: 176013-179864
Sequence    

Annotation

kegg
ID rcu:RCOM_0121060
description Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative (EC:2.5.1.54)
nr
ID XP_002531225.1
description Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q75LR2
description Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS1 PE=2 SV=2
trembl
ID B9SZ06
description Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast, putative OS=Ricinus communis GN=RCOM_0121060 PE=4 SV=1
Gene Ontology
ID GO:0003849
description phospho-2-dehydro-3-deoxyheptonate aldolase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44810: 176157-179844 , PASA_asmbl_44811: 176049-176760
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_200 0.0 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
2 Hb_006400_060 0.0511881362 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Jatropha curcas]
3 Hb_007426_030 0.0609347118 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
4 Hb_006400_030 0.0622816843 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
5 Hb_003032_040 0.0662086808 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
6 Hb_002016_110 0.0675388732 - - transducin family protein [Populus trichocarpa]
7 Hb_001959_210 0.0696680787 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
8 Hb_002079_010 0.0697744372 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]
9 Hb_007441_120 0.0712631804 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
10 Hb_000103_180 0.0739331555 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
11 Hb_000808_230 0.073976107 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
12 Hb_028872_140 0.0776787965 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
13 Hb_063090_010 0.0779019844 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
14 Hb_004724_200 0.0781837685 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
15 Hb_001199_020 0.0801601383 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
16 Hb_015306_020 0.0810733475 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
17 Hb_000107_620 0.0811496449 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
18 Hb_001771_090 0.0828178641 - - PREDICTED: uncharacterized protein LOC105634551 [Jatropha curcas]
19 Hb_007044_140 0.083546557 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
20 Hb_001454_210 0.0837220883 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]

Gene co-expression network

sample Hb_000483_200 Hb_000483_200 Hb_006400_060 Hb_006400_060 Hb_000483_200--Hb_006400_060 Hb_007426_030 Hb_007426_030 Hb_000483_200--Hb_007426_030 Hb_006400_030 Hb_006400_030 Hb_000483_200--Hb_006400_030 Hb_003032_040 Hb_003032_040 Hb_000483_200--Hb_003032_040 Hb_002016_110 Hb_002016_110 Hb_000483_200--Hb_002016_110 Hb_001959_210 Hb_001959_210 Hb_000483_200--Hb_001959_210 Hb_000808_230 Hb_000808_230 Hb_006400_060--Hb_000808_230 Hb_006400_060--Hb_003032_040 Hb_002079_010 Hb_002079_010 Hb_006400_060--Hb_002079_010 Hb_006400_060--Hb_002016_110 Hb_006400_060--Hb_006400_030 Hb_000103_180 Hb_000103_180 Hb_007426_030--Hb_000103_180 Hb_001019_060 Hb_001019_060 Hb_007426_030--Hb_001019_060 Hb_007426_030--Hb_000808_230 Hb_007426_030--Hb_002079_010 Hb_007426_030--Hb_006400_060 Hb_006400_030--Hb_003032_040 Hb_005618_170 Hb_005618_170 Hb_006400_030--Hb_005618_170 Hb_003976_010 Hb_003976_010 Hb_006400_030--Hb_003976_010 Hb_000107_620 Hb_000107_620 Hb_006400_030--Hb_000107_620 Hb_001818_090 Hb_001818_090 Hb_003032_040--Hb_001818_090 Hb_024185_020 Hb_024185_020 Hb_003032_040--Hb_024185_020 Hb_002449_020 Hb_002449_020 Hb_003032_040--Hb_002449_020 Hb_006915_050 Hb_006915_050 Hb_002016_110--Hb_006915_050 Hb_002026_180 Hb_002026_180 Hb_002016_110--Hb_002026_180 Hb_007441_120 Hb_007441_120 Hb_002016_110--Hb_007441_120 Hb_005663_060 Hb_005663_060 Hb_002016_110--Hb_005663_060 Hb_189003_080 Hb_189003_080 Hb_002016_110--Hb_189003_080 Hb_000030_300 Hb_000030_300 Hb_002016_110--Hb_000030_300 Hb_001009_170 Hb_001009_170 Hb_001959_210--Hb_001009_170 Hb_001959_210--Hb_006400_060 Hb_127552_030 Hb_127552_030 Hb_001959_210--Hb_127552_030 Hb_001959_210--Hb_006400_030 Hb_001959_210--Hb_024185_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.1787 11.1137 7.06458 11.2449 28.8098 37.0039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.1612 29.0203 32.4827 25.4053 17.0926

CAGE analysis