Hb_000483_220

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig483: 187873-189303
Sequence    

Annotation

kegg
ID pop:POPTR_0003s08210g
description hypothetical protein
nr
ID XP_012070112.1
description PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
swissprot
ID Q9LJG8
description Trihelix transcription factor ASIL2 OS=Arabidopsis thaliana GN=ASIL2 PE=2 SV=1
trembl
ID A0A067L637
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03496 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44812: 187855-189486
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_220 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
2 Hb_050454_010 0.0860262577 - - PREDICTED: uncharacterized protein LOC105630497 [Jatropha curcas]
3 Hb_000665_060 0.0924966482 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
4 Hb_007416_090 0.095442766 - - UDP-sugar transporter, putative [Ricinus communis]
5 Hb_004607_050 0.0962004316 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
6 Hb_000260_010 0.1023330107 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
7 Hb_001163_100 0.1041988853 - - serine/threonine protein kinase, putative [Ricinus communis]
8 Hb_000085_400 0.1047797499 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
9 Hb_044736_010 0.1047868901 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_000069_210 0.1048842466 - - PREDICTED: exportin-2 [Jatropha curcas]
11 Hb_003571_030 0.1079600832 - - hypothetical protein JCGZ_25894 [Jatropha curcas]
12 Hb_000999_050 0.1094704674 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
13 Hb_000340_230 0.1124988759 - - synapse-associated protein, putative [Ricinus communis]
14 Hb_002042_020 0.1146336977 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
15 Hb_005490_030 0.1147837572 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
16 Hb_029879_070 0.1148069946 - - PREDICTED: phospholipase A I [Jatropha curcas]
17 Hb_084646_010 0.1156441259 - - hypothetical protein CICLE_v10031746mg [Citrus clementina]
18 Hb_000928_020 0.1161935262 - - hypothetical protein CICLE_v10013682mg [Citrus clementina]
19 Hb_000174_180 0.1178016132 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_001268_110 0.1183526013 - - PREDICTED: uncharacterized protein LOC105630183 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000483_220 Hb_000483_220 Hb_050454_010 Hb_050454_010 Hb_000483_220--Hb_050454_010 Hb_000665_060 Hb_000665_060 Hb_000483_220--Hb_000665_060 Hb_007416_090 Hb_007416_090 Hb_000483_220--Hb_007416_090 Hb_004607_050 Hb_004607_050 Hb_000483_220--Hb_004607_050 Hb_000260_010 Hb_000260_010 Hb_000483_220--Hb_000260_010 Hb_001163_100 Hb_001163_100 Hb_000483_220--Hb_001163_100 Hb_044736_010 Hb_044736_010 Hb_050454_010--Hb_044736_010 Hb_001766_080 Hb_001766_080 Hb_050454_010--Hb_001766_080 Hb_001377_270 Hb_001377_270 Hb_050454_010--Hb_001377_270 Hb_001018_110 Hb_001018_110 Hb_050454_010--Hb_001018_110 Hb_005269_040 Hb_005269_040 Hb_050454_010--Hb_005269_040 Hb_000174_180 Hb_000174_180 Hb_000665_060--Hb_000174_180 Hb_000156_010 Hb_000156_010 Hb_000665_060--Hb_000156_010 Hb_000254_090 Hb_000254_090 Hb_000665_060--Hb_000254_090 Hb_000192_080 Hb_000192_080 Hb_000665_060--Hb_000192_080 Hb_009218_010 Hb_009218_010 Hb_000665_060--Hb_009218_010 Hb_000009_560 Hb_000009_560 Hb_000665_060--Hb_000009_560 Hb_000069_210 Hb_000069_210 Hb_007416_090--Hb_000069_210 Hb_001898_080 Hb_001898_080 Hb_007416_090--Hb_001898_080 Hb_000116_270 Hb_000116_270 Hb_007416_090--Hb_000116_270 Hb_001789_150 Hb_001789_150 Hb_007416_090--Hb_001789_150 Hb_149985_010 Hb_149985_010 Hb_007416_090--Hb_149985_010 Hb_000095_080 Hb_000095_080 Hb_007416_090--Hb_000095_080 Hb_000999_050 Hb_000999_050 Hb_004607_050--Hb_000999_050 Hb_000866_170 Hb_000866_170 Hb_004607_050--Hb_000866_170 Hb_005490_030 Hb_005490_030 Hb_004607_050--Hb_005490_030 Hb_002942_100 Hb_002942_100 Hb_004607_050--Hb_002942_100 Hb_000185_040 Hb_000185_040 Hb_004607_050--Hb_000185_040 Hb_006938_080 Hb_006938_080 Hb_004607_050--Hb_006938_080 Hb_000260_010--Hb_001163_100 Hb_027380_220 Hb_027380_220 Hb_000260_010--Hb_027380_220 Hb_002809_050 Hb_002809_050 Hb_000260_010--Hb_002809_050 Hb_001912_110 Hb_001912_110 Hb_000260_010--Hb_001912_110 Hb_001377_490 Hb_001377_490 Hb_000260_010--Hb_001377_490 Hb_164010_030 Hb_164010_030 Hb_000260_010--Hb_164010_030 Hb_000340_230 Hb_000340_230 Hb_001163_100--Hb_000340_230 Hb_004672_040 Hb_004672_040 Hb_001163_100--Hb_004672_040 Hb_001163_100--Hb_164010_030 Hb_001163_100--Hb_000009_560 Hb_001163_100--Hb_001377_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.1553 3.99501 1.88134 11.6477 5.65693 6.60543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.43019 5.78504 11.7731 9.36714 7.25767

CAGE analysis