Hb_000483_230

Information

Type -
Description -
Location Contig483: 194560-197464
Sequence    

Annotation

kegg
ID rcu:RCOM_0121530
description cationic amino acid transporter, putative
nr
ID XP_012070111.1
description PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9LZ20
description Cationic amino acid transporter 6, chloroplastic OS=Arabidopsis thaliana GN=CAT6 PE=2 SV=1
trembl
ID B9SZ12
description Cationic amino acid transporter, putative OS=Ricinus communis GN=RCOM_0121530 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cationic amino acid transporter chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44814: 194880-195767
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_230 0.0 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
2 Hb_007137_030 0.2071236561 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
3 Hb_126506_010 0.2113544987 - - Disease resistance protein RPS5, putative [Ricinus communis]
4 Hb_107495_050 0.2145181578 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]
5 Hb_151671_010 0.2236276779 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
6 Hb_001514_060 0.2239212021 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
7 Hb_155642_010 0.2281173948 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
8 Hb_093177_010 0.2330827847 - - Phosphoprotein phosphatase [Theobroma cacao]
9 Hb_000207_420 0.234082822 - - hypothetical protein POPTR_0019s11600g [Populus trichocarpa]
10 Hb_003893_020 0.2357708259 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 [Jatropha curcas]
11 Hb_042553_010 0.247892808 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
12 Hb_162074_010 0.2486009761 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
13 Hb_004611_060 0.2489756339 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
14 Hb_006738_060 0.250540487 - - ATP binding protein, putative [Ricinus communis]
15 Hb_001248_110 0.259995452 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
16 Hb_000699_190 0.2605758175 - - unknown [Populus trichocarpa]
17 Hb_000029_280 0.2619360111 - - PREDICTED: uncharacterized protein LOC105631804 [Jatropha curcas]
18 Hb_001608_030 0.2632186035 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
19 Hb_115158_010 0.2661351361 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
20 Hb_000431_030 0.2674511155 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000483_230 Hb_000483_230 Hb_007137_030 Hb_007137_030 Hb_000483_230--Hb_007137_030 Hb_126506_010 Hb_126506_010 Hb_000483_230--Hb_126506_010 Hb_107495_050 Hb_107495_050 Hb_000483_230--Hb_107495_050 Hb_151671_010 Hb_151671_010 Hb_000483_230--Hb_151671_010 Hb_001514_060 Hb_001514_060 Hb_000483_230--Hb_001514_060 Hb_155642_010 Hb_155642_010 Hb_000483_230--Hb_155642_010 Hb_001608_030 Hb_001608_030 Hb_007137_030--Hb_001608_030 Hb_093177_010 Hb_093177_010 Hb_007137_030--Hb_093177_010 Hb_042553_010 Hb_042553_010 Hb_007137_030--Hb_042553_010 Hb_133508_010 Hb_133508_010 Hb_007137_030--Hb_133508_010 Hb_102100_010 Hb_102100_010 Hb_007137_030--Hb_102100_010 Hb_115158_010 Hb_115158_010 Hb_007137_030--Hb_115158_010 Hb_162074_010 Hb_162074_010 Hb_126506_010--Hb_162074_010 Hb_126506_010--Hb_155642_010 Hb_003155_020 Hb_003155_020 Hb_126506_010--Hb_003155_020 Hb_009897_020 Hb_009897_020 Hb_126506_010--Hb_009897_020 Hb_123885_010 Hb_123885_010 Hb_126506_010--Hb_123885_010 Hb_001248_110 Hb_001248_110 Hb_126506_010--Hb_001248_110 Hb_005588_140 Hb_005588_140 Hb_107495_050--Hb_005588_140 Hb_083862_010 Hb_083862_010 Hb_107495_050--Hb_083862_010 Hb_000072_310 Hb_000072_310 Hb_107495_050--Hb_000072_310 Hb_000087_180 Hb_000087_180 Hb_107495_050--Hb_000087_180 Hb_002639_090 Hb_002639_090 Hb_107495_050--Hb_002639_090 Hb_000506_140 Hb_000506_140 Hb_107495_050--Hb_000506_140 Hb_151671_010--Hb_001514_060 Hb_002686_400 Hb_002686_400 Hb_151671_010--Hb_002686_400 Hb_151671_010--Hb_007137_030 Hb_000659_020 Hb_000659_020 Hb_151671_010--Hb_000659_020 Hb_006738_060 Hb_006738_060 Hb_151671_010--Hb_006738_060 Hb_001544_080 Hb_001544_080 Hb_151671_010--Hb_001544_080 Hb_001514_060--Hb_162074_010 Hb_001514_060--Hb_009897_020 Hb_000488_020 Hb_000488_020 Hb_001514_060--Hb_000488_020 Hb_004648_070 Hb_004648_070 Hb_001514_060--Hb_004648_070 Hb_000732_080 Hb_000732_080 Hb_001514_060--Hb_000732_080 Hb_002760_040 Hb_002760_040 Hb_001514_060--Hb_002760_040 Hb_125981_010 Hb_125981_010 Hb_155642_010--Hb_125981_010 Hb_127819_010 Hb_127819_010 Hb_155642_010--Hb_127819_010 Hb_000960_010 Hb_000960_010 Hb_155642_010--Hb_000960_010 Hb_090459_010 Hb_090459_010 Hb_155642_010--Hb_090459_010 Hb_116685_010 Hb_116685_010 Hb_155642_010--Hb_116685_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.218505 7.60741 0.0992063 2.74157 1.60148 1.21309
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.540744 0.579509

CAGE analysis