Hb_000483_250

Information

Type -
Description -
Location Contig483: 231507-245108
Sequence    

Annotation

kegg
ID tcc:TCM_045983
description Gag protease polyprotein-like protein
nr
ID XP_012491230.1
description PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
swissprot
ID Q8GXV5
description (S)-ureidoglycine aminohydrolase OS=Arabidopsis thaliana GN=UGLYAH PE=1 SV=1
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44817: 232808-240493 , PASA_asmbl_44819: 243639-245094 , PASA_asmbl_44820: 240426-245183
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_250 0.0 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
2 Hb_005211_190 0.0951313743 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
3 Hb_002107_120 0.0951810566 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
4 Hb_060618_010 0.0989399948 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
5 Hb_000836_140 0.1097820934 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
6 Hb_001424_020 0.1107853202 - - PREDICTED: AP-1 complex subunit sigma-2 isoform X2 [Solanum lycopersicum]
7 Hb_000083_090 0.1183025966 - - immunophilin, putative [Ricinus communis]
8 Hb_002609_210 0.1211055193 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
9 Hb_000365_080 0.1212885564 - - PREDICTED: uncharacterized protein LOC105649037 [Jatropha curcas]
10 Hb_008699_020 0.1213568416 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
11 Hb_026048_070 0.1222286467 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
12 Hb_000111_340 0.1254280436 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
13 Hb_001300_270 0.1257024388 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
14 Hb_002248_100 0.1270591266 - - hypothetical protein VITISV_027197 [Vitis vinifera]
15 Hb_007304_070 0.128161792 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
16 Hb_004109_020 0.1291194111 - - 60S ribosomal protein L18aA [Hevea brasiliensis]
17 Hb_000010_260 0.1295080871 - - PREDICTED: uncharacterized protein LOC105640273 [Jatropha curcas]
18 Hb_000506_120 0.1307510159 - - hypothetical protein AALP_AA6G154200 [Arabis alpina]
19 Hb_007944_040 0.1311160329 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
20 Hb_009421_040 0.1323814712 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]

Gene co-expression network

sample Hb_000483_250 Hb_000483_250 Hb_005211_190 Hb_005211_190 Hb_000483_250--Hb_005211_190 Hb_002107_120 Hb_002107_120 Hb_000483_250--Hb_002107_120 Hb_060618_010 Hb_060618_010 Hb_000483_250--Hb_060618_010 Hb_000836_140 Hb_000836_140 Hb_000483_250--Hb_000836_140 Hb_001424_020 Hb_001424_020 Hb_000483_250--Hb_001424_020 Hb_000083_090 Hb_000083_090 Hb_000483_250--Hb_000083_090 Hb_000365_080 Hb_000365_080 Hb_005211_190--Hb_000365_080 Hb_002609_210 Hb_002609_210 Hb_005211_190--Hb_002609_210 Hb_005211_190--Hb_001424_020 Hb_005211_190--Hb_002107_120 Hb_009421_040 Hb_009421_040 Hb_005211_190--Hb_009421_040 Hb_000680_140 Hb_000680_140 Hb_005211_190--Hb_000680_140 Hb_003053_030 Hb_003053_030 Hb_002107_120--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_002107_120--Hb_148200_010 Hb_000193_200 Hb_000193_200 Hb_002107_120--Hb_000193_200 Hb_003376_130 Hb_003376_130 Hb_002107_120--Hb_003376_130 Hb_001268_140 Hb_001268_140 Hb_002107_120--Hb_001268_140 Hb_060618_010--Hb_000836_140 Hb_002248_100 Hb_002248_100 Hb_060618_010--Hb_002248_100 Hb_001017_070 Hb_001017_070 Hb_060618_010--Hb_001017_070 Hb_007943_140 Hb_007943_140 Hb_060618_010--Hb_007943_140 Hb_010827_020 Hb_010827_020 Hb_060618_010--Hb_010827_020 Hb_008699_020 Hb_008699_020 Hb_000836_140--Hb_008699_020 Hb_000096_130 Hb_000096_130 Hb_000836_140--Hb_000096_130 Hb_002603_060 Hb_002603_060 Hb_000836_140--Hb_002603_060 Hb_000506_120 Hb_000506_120 Hb_000836_140--Hb_000506_120 Hb_000260_200 Hb_000260_200 Hb_001424_020--Hb_000260_200 Hb_001424_020--Hb_000365_080 Hb_002687_170 Hb_002687_170 Hb_001424_020--Hb_002687_170 Hb_000069_140 Hb_000069_140 Hb_001424_020--Hb_000069_140 Hb_001424_020--Hb_000083_090 Hb_000163_210 Hb_000163_210 Hb_000083_090--Hb_000163_210 Hb_000083_090--Hb_000260_200 Hb_000389_080 Hb_000389_080 Hb_000083_090--Hb_000389_080 Hb_000193_120 Hb_000193_120 Hb_000083_090--Hb_000193_120 Hb_004156_040 Hb_004156_040 Hb_000083_090--Hb_004156_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.4683 1.23511 0.762838 0.820691 1.59784 1.96063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.62029 8.70073 2.56468 2.67749 1.5922

CAGE analysis