Hb_000483_290

Information

Type -
Description -
Location Contig483: 260188-264885
Sequence    

Annotation

kegg
ID pmum:103337133
description ankyrin-1-like
nr
ID XP_008238508.1
description PREDICTED: ankyrin-1-like [Prunus mume]
swissprot
ID P16157
description Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3
trembl
ID W9S5J8
description Uncharacterized protein OS=Morus notabilis GN=L484_023404 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_290 0.0 - - PREDICTED: ankyrin-1-like [Prunus mume]
2 Hb_010681_020 0.0002317296 - - JHL22C18.10 [Jatropha curcas]
3 Hb_007101_240 0.0012444856 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000421_150 0.0024234171 - - Zinc finger protein GIS2 [Medicago truncatula]
5 Hb_000345_520 0.0124581529 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
6 Hb_023280_020 0.0138181675 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
7 Hb_000045_100 0.0154041629 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000819_050 0.0168399785 - - hypothetical protein Csa_4G290160 [Cucumis sativus]
9 Hb_033273_010 0.022512806 - - -
10 Hb_142461_010 0.0303490945 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
11 Hb_001950_050 0.036193537 - - -
12 Hb_175976_020 0.0381164824 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
13 Hb_000552_040 0.0428887725 - - -
14 Hb_001424_050 0.044069475 - - PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
15 Hb_005656_020 0.0455482643 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
16 Hb_002281_030 0.0570716204 - - -
17 Hb_034507_020 0.0609663268 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
18 Hb_002792_040 0.0614612661 - - -
19 Hb_017226_020 0.0620991555 transcription factor TF Family: MYB hypothetical protein JCGZ_06720 [Jatropha curcas]
20 Hb_007455_010 0.0763832177 - - PREDICTED: uncharacterized protein LOC105800996 [Gossypium raimondii]

Gene co-expression network

sample Hb_000483_290 Hb_000483_290 Hb_010681_020 Hb_010681_020 Hb_000483_290--Hb_010681_020 Hb_007101_240 Hb_007101_240 Hb_000483_290--Hb_007101_240 Hb_000421_150 Hb_000421_150 Hb_000483_290--Hb_000421_150 Hb_000345_520 Hb_000345_520 Hb_000483_290--Hb_000345_520 Hb_023280_020 Hb_023280_020 Hb_000483_290--Hb_023280_020 Hb_000045_100 Hb_000045_100 Hb_000483_290--Hb_000045_100 Hb_010681_020--Hb_007101_240 Hb_010681_020--Hb_000421_150 Hb_010681_020--Hb_000345_520 Hb_010681_020--Hb_023280_020 Hb_010681_020--Hb_000045_100 Hb_007101_240--Hb_000421_150 Hb_007101_240--Hb_000345_520 Hb_007101_240--Hb_000045_100 Hb_007101_240--Hb_023280_020 Hb_000421_150--Hb_000045_100 Hb_000421_150--Hb_000345_520 Hb_000421_150--Hb_023280_020 Hb_000345_520--Hb_023280_020 Hb_000819_050 Hb_000819_050 Hb_000345_520--Hb_000819_050 Hb_023280_020--Hb_000819_050 Hb_033273_010 Hb_033273_010 Hb_000045_100--Hb_033273_010 Hb_001950_050 Hb_001950_050 Hb_000045_100--Hb_001950_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0199857 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00489993 0

CAGE analysis