Hb_000483_300

Information

Type -
Description -
Location Contig483: 266014-268465
Sequence    

Annotation

kegg
ID rcu:RCOM_0120930
description ATP-dependent Clp protease proteolytic subunit, putative (EC:3.4.21.92)
nr
ID XP_011031968.1
description PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
swissprot
ID Q8LB10
description ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1
trembl
ID B9SZ03
description ATP-dependent Clp protease proteolytic subunit OS=Ricinus communis GN=RCOM_0120930 PE=3 SV=1
Gene Ontology
ID GO:0009570
description atp-dependent clp protease proteolytic subunit-related protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44825: 265994-281672 , PASA_asmbl_44826: 265994-292253
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_300 0.0 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
2 Hb_000347_240 0.0619812344 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
3 Hb_001189_070 0.0710085302 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
4 Hb_004157_050 0.0714107009 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
5 Hb_001366_180 0.0735689206 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
6 Hb_023371_020 0.0789845596 - - PREDICTED: uncharacterized protein LOC105633512 [Jatropha curcas]
7 Hb_000053_020 0.0818531178 - - F-box and wd40 domain protein, putative [Ricinus communis]
8 Hb_000069_720 0.0821880057 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
9 Hb_001512_010 0.0824439679 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
10 Hb_008103_050 0.0825791963 - - hypothetical protein JCGZ_07422 [Jatropha curcas]
11 Hb_001489_090 0.0857908248 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
12 Hb_000310_090 0.0860540112 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
13 Hb_001662_130 0.0873315002 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
14 Hb_002014_030 0.0883431998 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
15 Hb_185255_010 0.0885596179 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
16 Hb_001269_190 0.0889660446 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
17 Hb_001307_030 0.0899602683 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
18 Hb_004545_110 0.0900554057 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
19 Hb_008841_020 0.0902963887 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
20 Hb_000289_110 0.0913492267 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_000483_300 Hb_000483_300 Hb_000347_240 Hb_000347_240 Hb_000483_300--Hb_000347_240 Hb_001189_070 Hb_001189_070 Hb_000483_300--Hb_001189_070 Hb_004157_050 Hb_004157_050 Hb_000483_300--Hb_004157_050 Hb_001366_180 Hb_001366_180 Hb_000483_300--Hb_001366_180 Hb_023371_020 Hb_023371_020 Hb_000483_300--Hb_023371_020 Hb_000053_020 Hb_000053_020 Hb_000483_300--Hb_000053_020 Hb_000347_240--Hb_001189_070 Hb_004545_110 Hb_004545_110 Hb_000347_240--Hb_004545_110 Hb_001489_090 Hb_001489_090 Hb_000347_240--Hb_001489_090 Hb_006573_190 Hb_006573_190 Hb_000347_240--Hb_006573_190 Hb_000566_120 Hb_000566_120 Hb_000347_240--Hb_000566_120 Hb_008841_020 Hb_008841_020 Hb_001189_070--Hb_008841_020 Hb_000310_090 Hb_000310_090 Hb_001189_070--Hb_000310_090 Hb_031862_100 Hb_031862_100 Hb_001189_070--Hb_031862_100 Hb_011344_120 Hb_011344_120 Hb_001189_070--Hb_011344_120 Hb_001314_050 Hb_001314_050 Hb_001189_070--Hb_001314_050 Hb_001301_110 Hb_001301_110 Hb_004157_050--Hb_001301_110 Hb_000069_720 Hb_000069_720 Hb_004157_050--Hb_000069_720 Hb_000665_140 Hb_000665_140 Hb_004157_050--Hb_000665_140 Hb_001123_040 Hb_001123_040 Hb_004157_050--Hb_001123_040 Hb_003058_120 Hb_003058_120 Hb_004157_050--Hb_003058_120 Hb_011218_090 Hb_011218_090 Hb_004157_050--Hb_011218_090 Hb_006274_030 Hb_006274_030 Hb_001366_180--Hb_006274_030 Hb_005144_050 Hb_005144_050 Hb_001366_180--Hb_005144_050 Hb_000289_110 Hb_000289_110 Hb_001366_180--Hb_000289_110 Hb_000479_250 Hb_000479_250 Hb_001366_180--Hb_000479_250 Hb_006478_020 Hb_006478_020 Hb_001366_180--Hb_006478_020 Hb_002014_030 Hb_002014_030 Hb_001366_180--Hb_002014_030 Hb_003878_090 Hb_003878_090 Hb_023371_020--Hb_003878_090 Hb_001141_420 Hb_001141_420 Hb_023371_020--Hb_001141_420 Hb_023371_020--Hb_004545_110 Hb_023371_020--Hb_004157_050 Hb_133702_010 Hb_133702_010 Hb_023371_020--Hb_133702_010 Hb_000260_350 Hb_000260_350 Hb_023371_020--Hb_000260_350 Hb_003768_030 Hb_003768_030 Hb_000053_020--Hb_003768_030 Hb_008453_030 Hb_008453_030 Hb_000053_020--Hb_008453_030 Hb_001386_040 Hb_001386_040 Hb_000053_020--Hb_001386_040 Hb_000053_020--Hb_006274_030 Hb_000053_020--Hb_001189_070 Hb_000053_020--Hb_001489_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.48421 10.7369 14.8406 24.9479 10.71 14.5824
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.1771 25.0816 17.2334 18.7659 25.6037

CAGE analysis