Hb_000483_350

Information

Type -
Description -
Location Contig483: 311537-313072
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15160g
description hypothetical protein
nr
ID XP_012070140.1
description PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L618
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03476 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44830: 312610-313155
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_350 0.0 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
2 Hb_004109_200 0.072817142 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
3 Hb_000554_020 0.0786490482 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
4 Hb_004055_010 0.0795667583 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
5 Hb_004221_010 0.0832082531 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
6 Hb_009382_020 0.0840876351 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
7 Hb_000085_270 0.0841226903 - - PREDICTED: pirin-like protein [Malus domestica]
8 Hb_001248_050 0.0875620798 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
9 Hb_001138_050 0.0923670006 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
10 Hb_004920_040 0.0929949774 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
11 Hb_002375_020 0.0930209613 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
12 Hb_008959_030 0.0948134644 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
13 Hb_005062_070 0.0962429189 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
14 Hb_001584_330 0.0992632869 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
15 Hb_002762_060 0.1004522388 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
16 Hb_000139_410 0.1027794344 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
17 Hb_006775_080 0.104263279 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
18 Hb_001030_120 0.1044110388 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
19 Hb_024835_030 0.1048361701 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
20 Hb_002890_280 0.1050688654 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]

Gene co-expression network

sample Hb_000483_350 Hb_000483_350 Hb_004109_200 Hb_004109_200 Hb_000483_350--Hb_004109_200 Hb_000554_020 Hb_000554_020 Hb_000483_350--Hb_000554_020 Hb_004055_010 Hb_004055_010 Hb_000483_350--Hb_004055_010 Hb_004221_010 Hb_004221_010 Hb_000483_350--Hb_004221_010 Hb_009382_020 Hb_009382_020 Hb_000483_350--Hb_009382_020 Hb_000085_270 Hb_000085_270 Hb_000483_350--Hb_000085_270 Hb_010381_070 Hb_010381_070 Hb_004109_200--Hb_010381_070 Hb_000139_410 Hb_000139_410 Hb_004109_200--Hb_000139_410 Hb_021254_030 Hb_021254_030 Hb_004109_200--Hb_021254_030 Hb_002375_020 Hb_002375_020 Hb_004109_200--Hb_002375_020 Hb_005306_110 Hb_005306_110 Hb_004109_200--Hb_005306_110 Hb_000406_220 Hb_000406_220 Hb_000554_020--Hb_000406_220 Hb_006332_020 Hb_006332_020 Hb_000554_020--Hb_006332_020 Hb_000754_060 Hb_000754_060 Hb_000554_020--Hb_000754_060 Hb_001671_020 Hb_001671_020 Hb_000554_020--Hb_001671_020 Hb_028872_140 Hb_028872_140 Hb_000554_020--Hb_028872_140 Hb_000032_290 Hb_000032_290 Hb_000554_020--Hb_000032_290 Hb_008959_030 Hb_008959_030 Hb_004055_010--Hb_008959_030 Hb_004055_010--Hb_004221_010 Hb_004055_010--Hb_004109_200 Hb_001655_070 Hb_001655_070 Hb_004055_010--Hb_001655_070 Hb_002762_060 Hb_002762_060 Hb_004055_010--Hb_002762_060 Hb_158092_070 Hb_158092_070 Hb_004221_010--Hb_158092_070 Hb_004221_010--Hb_002762_060 Hb_001248_050 Hb_001248_050 Hb_004221_010--Hb_001248_050 Hb_000032_570 Hb_000032_570 Hb_004221_010--Hb_000032_570 Hb_000877_060 Hb_000877_060 Hb_004221_010--Hb_000877_060 Hb_000300_620 Hb_000300_620 Hb_009382_020--Hb_000300_620 Hb_000138_040 Hb_000138_040 Hb_009382_020--Hb_000138_040 Hb_001157_030 Hb_001157_030 Hb_009382_020--Hb_001157_030 Hb_005062_070 Hb_005062_070 Hb_009382_020--Hb_005062_070 Hb_002890_280 Hb_002890_280 Hb_009382_020--Hb_002890_280 Hb_000085_270--Hb_001248_050 Hb_000085_270--Hb_004109_200 Hb_000085_270--Hb_004221_010 Hb_000085_270--Hb_004055_010 Hb_004920_040 Hb_004920_040 Hb_000085_270--Hb_004920_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.922 6.45196 0.937228 2.5317 7.35651 9.71055
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1804 9.15692 8.49732 3.33908 2.30307

CAGE analysis