Hb_000483_390

Information

Type -
Description -
Location Contig483: 339895-344662
Sequence    

Annotation

kegg
ID rcu:RCOM_0192760
description vesicle-associated membrane protein, putative
nr
ID XP_012070082.1
description PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
swissprot
ID Q9LVU1
description Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=1 SV=1
trembl
ID A0A067L615
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03471 PE=4 SV=1
Gene Ontology
ID GO:0016020
description vesicle-associated protein 2-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44838: 339920-344306 , PASA_asmbl_44839: 339920-344515 , PASA_asmbl_44840: 340456-340575
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_390 0.0 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
2 Hb_114310_080 0.0782702433 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003414_050 0.0813977448 - - PREDICTED: uncharacterized protein LOC105640180 isoform X3 [Jatropha curcas]
4 Hb_000638_170 0.0860150458 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
5 Hb_011381_080 0.0873606402 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
6 Hb_003671_020 0.0909316298 - - calcineurin B, putative [Ricinus communis]
7 Hb_028515_010 0.0937800684 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
8 Hb_011377_050 0.0965125465 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like isoform X1 [Jatropha curcas]
9 Hb_002110_200 0.0968995709 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_000120_020 0.0970262289 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
11 Hb_005269_080 0.1004254946 - - protein with unknown function [Ricinus communis]
12 Hb_000701_100 0.1010358225 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
13 Hb_009615_070 0.1018001154 - - type X protein phosphatase-II [Populus trichocarpa]
14 Hb_001842_040 0.1018641825 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
15 Hb_000019_070 0.1025903939 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
16 Hb_000479_160 0.10361625 - - Membrane-anchored ubiquitin-fold protein 1 precursor isoform 2 [Theobroma cacao]
17 Hb_000254_050 0.1062990143 - - hypothetical protein VITISV_010510 [Vitis vinifera]
18 Hb_000441_190 0.1068078593 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
19 Hb_007100_030 0.1068623892 - - 40S ribosomal protein S17B [Hevea brasiliensis]
20 Hb_000985_060 0.1085871614 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000483_390 Hb_000483_390 Hb_114310_080 Hb_114310_080 Hb_000483_390--Hb_114310_080 Hb_003414_050 Hb_003414_050 Hb_000483_390--Hb_003414_050 Hb_000638_170 Hb_000638_170 Hb_000483_390--Hb_000638_170 Hb_011381_080 Hb_011381_080 Hb_000483_390--Hb_011381_080 Hb_003671_020 Hb_003671_020 Hb_000483_390--Hb_003671_020 Hb_028515_010 Hb_028515_010 Hb_000483_390--Hb_028515_010 Hb_000985_060 Hb_000985_060 Hb_114310_080--Hb_000985_060 Hb_114310_080--Hb_028515_010 Hb_029388_030 Hb_029388_030 Hb_114310_080--Hb_029388_030 Hb_000417_260 Hb_000417_260 Hb_114310_080--Hb_000417_260 Hb_001461_010 Hb_001461_010 Hb_114310_080--Hb_001461_010 Hb_003414_050--Hb_003671_020 Hb_009615_070 Hb_009615_070 Hb_003414_050--Hb_009615_070 Hb_000701_100 Hb_000701_100 Hb_003414_050--Hb_000701_100 Hb_000125_100 Hb_000125_100 Hb_003414_050--Hb_000125_100 Hb_007009_010 Hb_007009_010 Hb_003414_050--Hb_007009_010 Hb_009486_020 Hb_009486_020 Hb_000638_170--Hb_009486_020 Hb_002303_060 Hb_002303_060 Hb_000638_170--Hb_002303_060 Hb_000336_240 Hb_000336_240 Hb_000638_170--Hb_000336_240 Hb_000638_170--Hb_114310_080 Hb_000805_240 Hb_000805_240 Hb_000638_170--Hb_000805_240 Hb_000120_020 Hb_000120_020 Hb_011381_080--Hb_000120_020 Hb_000254_050 Hb_000254_050 Hb_011381_080--Hb_000254_050 Hb_004837_160 Hb_004837_160 Hb_011381_080--Hb_004837_160 Hb_011381_080--Hb_028515_010 Hb_002110_200 Hb_002110_200 Hb_011381_080--Hb_002110_200 Hb_012423_030 Hb_012423_030 Hb_011381_080--Hb_012423_030 Hb_003671_020--Hb_000125_100 Hb_003671_020--Hb_029388_030 Hb_002375_070 Hb_002375_070 Hb_003671_020--Hb_002375_070 Hb_003671_020--Hb_009615_070 Hb_000479_190 Hb_000479_190 Hb_003671_020--Hb_000479_190 Hb_005568_120 Hb_005568_120 Hb_028515_010--Hb_005568_120 Hb_028515_010--Hb_004837_160 Hb_000373_130 Hb_000373_130 Hb_028515_010--Hb_000373_130 Hb_003349_090 Hb_003349_090 Hb_028515_010--Hb_003349_090 Hb_028515_010--Hb_000985_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.821 11.2582 12.6948 34.3799 12.3152 23.0922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.8008 61.9717 47.0382 11.811 17.633

CAGE analysis