Hb_000483_410

Information

Type -
Description -
Location Contig483: 348737-350619
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15230g
description ribosomal protein L19
nr
ID XP_012070081.1
description PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
swissprot
ID P82413
description 50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2
trembl
ID A0A067L754
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03470 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein l19- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_410 0.0 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
2 Hb_011781_030 0.0762151723 - - Frataxin, mitochondrial precursor, putative [Ricinus communis]
3 Hb_004317_040 0.0783283213 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
4 Hb_000877_020 0.0846642445 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
5 Hb_000680_140 0.0916882451 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
6 Hb_004108_230 0.0938179518 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
7 Hb_094608_010 0.0967407031 - - PREDICTED: uncharacterized protein LOC105630444 isoform X3 [Jatropha curcas]
8 Hb_001160_030 0.1003369932 transcription factor TF Family: Alfin-like hypothetical protein POPTR_0018s05470g [Populus trichocarpa]
9 Hb_003376_030 0.1004867295 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
10 Hb_005432_030 0.1007517476 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]
11 Hb_001080_080 0.1013071242 - - small nuclear ribonucleoprotein, putative [Ricinus communis]
12 Hb_003175_040 0.1028565696 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
13 Hb_000840_030 0.1039275308 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
14 Hb_143629_230 0.1067486223 - - ring finger, putative [Ricinus communis]
15 Hb_002830_020 0.1073743666 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_139518_030 0.1078777553 - - protein kinase atn1, putative [Ricinus communis]
17 Hb_002918_200 0.1082682597 - - -
18 Hb_001268_140 0.1090413725 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003455_040 0.1099662705 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
20 Hb_000086_070 0.1112851135 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000483_410 Hb_000483_410 Hb_011781_030 Hb_011781_030 Hb_000483_410--Hb_011781_030 Hb_004317_040 Hb_004317_040 Hb_000483_410--Hb_004317_040 Hb_000877_020 Hb_000877_020 Hb_000483_410--Hb_000877_020 Hb_000680_140 Hb_000680_140 Hb_000483_410--Hb_000680_140 Hb_004108_230 Hb_004108_230 Hb_000483_410--Hb_004108_230 Hb_094608_010 Hb_094608_010 Hb_000483_410--Hb_094608_010 Hb_018133_060 Hb_018133_060 Hb_011781_030--Hb_018133_060 Hb_143629_230 Hb_143629_230 Hb_011781_030--Hb_143629_230 Hb_000840_030 Hb_000840_030 Hb_011781_030--Hb_000840_030 Hb_000340_140 Hb_000340_140 Hb_011781_030--Hb_000340_140 Hb_000317_340 Hb_000317_340 Hb_011781_030--Hb_000317_340 Hb_001080_080 Hb_001080_080 Hb_004317_040--Hb_001080_080 Hb_029584_060 Hb_029584_060 Hb_004317_040--Hb_029584_060 Hb_004317_040--Hb_011781_030 Hb_002830_020 Hb_002830_020 Hb_004317_040--Hb_002830_020 Hb_004317_040--Hb_000317_340 Hb_000877_020--Hb_094608_010 Hb_001117_090 Hb_001117_090 Hb_000877_020--Hb_001117_090 Hb_024714_010 Hb_024714_010 Hb_000877_020--Hb_024714_010 Hb_012725_050 Hb_012725_050 Hb_000877_020--Hb_012725_050 Hb_002214_040 Hb_002214_040 Hb_000877_020--Hb_002214_040 Hb_004459_040 Hb_004459_040 Hb_000680_140--Hb_004459_040 Hb_153112_030 Hb_153112_030 Hb_000680_140--Hb_153112_030 Hb_007576_170 Hb_007576_170 Hb_000680_140--Hb_007576_170 Hb_006541_010 Hb_006541_010 Hb_000680_140--Hb_006541_010 Hb_001616_040 Hb_001616_040 Hb_000680_140--Hb_001616_040 Hb_000668_040 Hb_000668_040 Hb_000680_140--Hb_000668_040 Hb_002918_200 Hb_002918_200 Hb_004108_230--Hb_002918_200 Hb_000120_750 Hb_000120_750 Hb_004108_230--Hb_000120_750 Hb_003175_040 Hb_003175_040 Hb_004108_230--Hb_003175_040 Hb_004837_140 Hb_004837_140 Hb_004108_230--Hb_004837_140 Hb_011794_070 Hb_011794_070 Hb_004108_230--Hb_011794_070 Hb_044662_070 Hb_044662_070 Hb_004108_230--Hb_044662_070 Hb_094608_010--Hb_002830_020 Hb_094608_010--Hb_007576_170 Hb_007012_060 Hb_007012_060 Hb_094608_010--Hb_007012_060 Hb_005181_030 Hb_005181_030 Hb_094608_010--Hb_005181_030 Hb_101705_030 Hb_101705_030 Hb_094608_010--Hb_101705_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.08382 0.772367 2.04521 1.00209 1.51384 3.58951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.40869 6.42369 4.16116 1.38326 1.86996

CAGE analysis