Hb_000483_420

Information

Type -
Description -
Location Contig483: 368780-373308
Sequence    

Annotation

kegg
ID rcu:RCOM_0192740
description Glycerol-3-phosphate transporter, putative
nr
ID XP_012070079.1
description PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
swissprot
ID O23596
description Putative glycerol-3-phosphate transporter 4 OS=Arabidopsis thaliana GN=At4g17550 PE=3 SV=2
trembl
ID B9T0L8
description Glycerol-3-phosphate transporter, putative OS=Ricinus communis GN=RCOM_0192740 PE=4 SV=1
Gene Ontology
ID GO:0016020
description glycerol-3-phosphate transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_420 0.0 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
2 Hb_000576_040 0.1993120829 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
3 Hb_002739_110 0.2043379849 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
4 Hb_152439_020 0.2051030141 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
5 Hb_000193_250 0.2081169115 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Jatropha curcas]
6 Hb_004324_350 0.2115109687 - - PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo]
7 Hb_000249_130 0.2180659117 - - hypothetical protein RCOM_0254640 [Ricinus communis]
8 Hb_002498_060 0.2187185173 - - ATP binding protein, putative [Ricinus communis]
9 Hb_013818_060 0.2192520436 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
10 Hb_004306_060 0.2212610084 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
11 Hb_001268_400 0.2243312294 - - PREDICTED: uncharacterized protein LOC104583970 [Brachypodium distachyon]
12 Hb_143629_090 0.2254386678 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
13 Hb_000866_150 0.2271362915 - - -
14 Hb_001004_040 0.2305523076 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003497_030 0.2326189967 - - ADP-ribosylation factor, putative [Ricinus communis]
16 Hb_000260_060 0.2344798364 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6 [Jatropha curcas]
17 Hb_010417_020 0.2380097161 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
18 Hb_000380_180 0.2381416939 - - kinase, putative [Ricinus communis]
19 Hb_004800_160 0.2383117818 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
20 Hb_000157_010 0.2384017295 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]

Gene co-expression network

sample Hb_000483_420 Hb_000483_420 Hb_000576_040 Hb_000576_040 Hb_000483_420--Hb_000576_040 Hb_002739_110 Hb_002739_110 Hb_000483_420--Hb_002739_110 Hb_152439_020 Hb_152439_020 Hb_000483_420--Hb_152439_020 Hb_000193_250 Hb_000193_250 Hb_000483_420--Hb_000193_250 Hb_004324_350 Hb_004324_350 Hb_000483_420--Hb_004324_350 Hb_000249_130 Hb_000249_130 Hb_000483_420--Hb_000249_130 Hb_004306_060 Hb_004306_060 Hb_000576_040--Hb_004306_060 Hb_000576_040--Hb_152439_020 Hb_000479_130 Hb_000479_130 Hb_000576_040--Hb_000479_130 Hb_119600_040 Hb_119600_040 Hb_000576_040--Hb_119600_040 Hb_000576_040--Hb_000193_250 Hb_000297_200 Hb_000297_200 Hb_000576_040--Hb_000297_200 Hb_001396_230 Hb_001396_230 Hb_002739_110--Hb_001396_230 Hb_001004_040 Hb_001004_040 Hb_002739_110--Hb_001004_040 Hb_000380_180 Hb_000380_180 Hb_002739_110--Hb_000380_180 Hb_002739_110--Hb_152439_020 Hb_002739_110--Hb_000249_130 Hb_008085_040 Hb_008085_040 Hb_002739_110--Hb_008085_040 Hb_152439_020--Hb_000193_250 Hb_000157_010 Hb_000157_010 Hb_152439_020--Hb_000157_010 Hb_183612_100 Hb_183612_100 Hb_152439_020--Hb_183612_100 Hb_152439_020--Hb_004306_060 Hb_143629_090 Hb_143629_090 Hb_152439_020--Hb_143629_090 Hb_002498_060 Hb_002498_060 Hb_152439_020--Hb_002498_060 Hb_000193_250--Hb_004306_060 Hb_001856_020 Hb_001856_020 Hb_000193_250--Hb_001856_020 Hb_004800_160 Hb_004800_160 Hb_000193_250--Hb_004800_160 Hb_000427_030 Hb_000427_030 Hb_000193_250--Hb_000427_030 Hb_000179_210 Hb_000179_210 Hb_000193_250--Hb_000179_210 Hb_004324_350--Hb_000380_180 Hb_001488_100 Hb_001488_100 Hb_004324_350--Hb_001488_100 Hb_001767_010 Hb_001767_010 Hb_004324_350--Hb_001767_010 Hb_004324_350--Hb_002498_060 Hb_004324_350--Hb_002739_110 Hb_004324_350--Hb_000249_130 Hb_000249_130--Hb_143629_090 Hb_003030_080 Hb_003030_080 Hb_000249_130--Hb_003030_080 Hb_003497_030 Hb_003497_030 Hb_000249_130--Hb_003497_030 Hb_024952_010 Hb_024952_010 Hb_000249_130--Hb_024952_010 Hb_001606_070 Hb_001606_070 Hb_000249_130--Hb_001606_070 Hb_000249_130--Hb_000380_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.02985 0.0541605 0 0.128309 0.664006 0.53596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.119242 0.797409 2.11827 0.0374261 0.0982931

CAGE analysis