Hb_000484_020

Information

Type -
Description -
Location Contig484: 43714-54388
Sequence    

Annotation

kegg
ID cic:CICLE_v10029529mg
description hypothetical protein
nr
ID KDO68109.1
description hypothetical protein CISIN_1g030884mg [Citrus sinensis]
swissprot
ID Q54CU7
description Trafficking protein particle complex subunit 2-like protein OS=Dictyostelium discoideum GN=trappc2l PE=3 SV=1
trembl
ID A0A067FL32
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030884mg PE=4 SV=1
Gene Ontology
ID GO:0005737
description trafficking protein particle complex subunit 2-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44906: 43733-54395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000484_020 0.0 - - hypothetical protein CISIN_1g030884mg [Citrus sinensis]
2 Hb_002571_020 0.0769850292 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
3 Hb_012022_120 0.0816885156 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
4 Hb_000995_040 0.0858824833 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000312_090 0.0889144391 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
6 Hb_000505_140 0.0889257729 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
7 Hb_003126_090 0.0915032941 - - Rop1 [Hevea brasiliensis]
8 Hb_002311_320 0.092790926 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
9 Hb_000000_170 0.0934046592 - - defender against cell death, putative [Ricinus communis]
10 Hb_009851_100 0.0936078828 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
11 Hb_032202_090 0.0960867498 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
12 Hb_000526_150 0.0987068594 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
13 Hb_003125_150 0.1001926357 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
14 Hb_002900_160 0.1009147551 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]
15 Hb_001221_310 0.1012286301 - - sec61 gamma subunit, putative [Ricinus communis]
16 Hb_116420_030 0.1030684699 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
17 Hb_000120_750 0.1039392826 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
18 Hb_182305_020 0.1049175857 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]
19 Hb_002830_020 0.1051078947 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
20 Hb_001638_260 0.1060684237 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]

Gene co-expression network

sample Hb_000484_020 Hb_000484_020 Hb_002571_020 Hb_002571_020 Hb_000484_020--Hb_002571_020 Hb_012022_120 Hb_012022_120 Hb_000484_020--Hb_012022_120 Hb_000995_040 Hb_000995_040 Hb_000484_020--Hb_000995_040 Hb_000312_090 Hb_000312_090 Hb_000484_020--Hb_000312_090 Hb_000505_140 Hb_000505_140 Hb_000484_020--Hb_000505_140 Hb_003126_090 Hb_003126_090 Hb_000484_020--Hb_003126_090 Hb_009851_100 Hb_009851_100 Hb_002571_020--Hb_009851_100 Hb_000120_750 Hb_000120_750 Hb_002571_020--Hb_000120_750 Hb_001045_080 Hb_001045_080 Hb_002571_020--Hb_001045_080 Hb_003376_130 Hb_003376_130 Hb_002571_020--Hb_003376_130 Hb_003125_150 Hb_003125_150 Hb_002571_020--Hb_003125_150 Hb_012022_120--Hb_000505_140 Hb_002830_020 Hb_002830_020 Hb_012022_120--Hb_002830_020 Hb_032202_090 Hb_032202_090 Hb_012022_120--Hb_032202_090 Hb_000000_170 Hb_000000_170 Hb_012022_120--Hb_000000_170 Hb_012022_120--Hb_000995_040 Hb_005278_020 Hb_005278_020 Hb_012022_120--Hb_005278_020 Hb_000995_040--Hb_005278_020 Hb_000086_550 Hb_000086_550 Hb_000995_040--Hb_000086_550 Hb_000995_040--Hb_032202_090 Hb_000995_040--Hb_000505_140 Hb_000617_090 Hb_000617_090 Hb_000312_090--Hb_000617_090 Hb_001221_310 Hb_001221_310 Hb_000312_090--Hb_001221_310 Hb_000312_090--Hb_009851_100 Hb_000312_090--Hb_003125_150 Hb_000312_090--Hb_001045_080 Hb_002835_320 Hb_002835_320 Hb_000312_090--Hb_002835_320 Hb_000505_140--Hb_000000_170 Hb_000505_140--Hb_032202_090 Hb_004502_020 Hb_004502_020 Hb_000505_140--Hb_004502_020 Hb_000505_140--Hb_000086_550 Hb_000926_300 Hb_000926_300 Hb_000505_140--Hb_000926_300 Hb_033594_110 Hb_033594_110 Hb_003126_090--Hb_033594_110 Hb_000934_250 Hb_000934_250 Hb_003126_090--Hb_000934_250 Hb_001016_030 Hb_001016_030 Hb_003126_090--Hb_001016_030 Hb_001318_250 Hb_001318_250 Hb_003126_090--Hb_001318_250 Hb_065525_020 Hb_065525_020 Hb_003126_090--Hb_065525_020 Hb_003126_090--Hb_002830_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.2465 4.31666 14.0749 29.7937 30.8926 29.543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.4737 75.3681 25.5355 16.3487 7.07807

CAGE analysis