Hb_000484_030

Information

Type -
Description -
Location Contig484: 54870-58408
Sequence    

Annotation

kegg
ID vvi:100264130
description probable 26S proteasome non-ATPase regulatory subunit 3
nr
ID XP_012081815.1
description PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
swissprot
ID Q06364
description Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Daucus carota GN=21D7 PE=1 SV=2
trembl
ID A0A067K0L9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18844 PE=4 SV=1
Gene Ontology
ID GO:0000502
description probable 26s proteasome non-atpase regulatory subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44907: 54938-58480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000484_030 0.0 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
2 Hb_008453_140 0.0551426803 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
3 Hb_001409_020 0.0552983142 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
4 Hb_001408_040 0.0592852339 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
5 Hb_007416_340 0.0601854568 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_003125_120 0.0602311228 - - PREDICTED: TITAN-like protein [Jatropha curcas]
7 Hb_000696_230 0.0602396639 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
8 Hb_008406_200 0.0604063393 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
9 Hb_014361_070 0.0621187119 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
10 Hb_003680_150 0.0628390021 - - srpk, putative [Ricinus communis]
11 Hb_000975_040 0.0630222182 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
12 Hb_001142_030 0.0632416478 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
13 Hb_000334_280 0.0639004783 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
14 Hb_011609_140 0.0644691866 - - hypothetical protein JCGZ_12974 [Jatropha curcas]
15 Hb_010381_090 0.0655167779 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
16 Hb_001248_060 0.0658888291 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000345_380 0.0664211335 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
18 Hb_000679_310 0.0671454338 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
19 Hb_019280_030 0.0682437171 - - -
20 Hb_007576_110 0.0688607401 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]

Gene co-expression network

sample Hb_000484_030 Hb_000484_030 Hb_008453_140 Hb_008453_140 Hb_000484_030--Hb_008453_140 Hb_001409_020 Hb_001409_020 Hb_000484_030--Hb_001409_020 Hb_001408_040 Hb_001408_040 Hb_000484_030--Hb_001408_040 Hb_007416_340 Hb_007416_340 Hb_000484_030--Hb_007416_340 Hb_003125_120 Hb_003125_120 Hb_000484_030--Hb_003125_120 Hb_000696_230 Hb_000696_230 Hb_000484_030--Hb_000696_230 Hb_120410_010 Hb_120410_010 Hb_008453_140--Hb_120410_010 Hb_010381_090 Hb_010381_090 Hb_008453_140--Hb_010381_090 Hb_008453_140--Hb_003125_120 Hb_001142_030 Hb_001142_030 Hb_008453_140--Hb_001142_030 Hb_002872_030 Hb_002872_030 Hb_008453_140--Hb_002872_030 Hb_000220_010 Hb_000220_010 Hb_008453_140--Hb_000220_010 Hb_010618_010 Hb_010618_010 Hb_001409_020--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_001409_020--Hb_001248_060 Hb_013399_100 Hb_013399_100 Hb_001409_020--Hb_013399_100 Hb_167498_010 Hb_167498_010 Hb_001409_020--Hb_167498_010 Hb_008406_200 Hb_008406_200 Hb_001409_020--Hb_008406_200 Hb_007576_110 Hb_007576_110 Hb_001409_020--Hb_007576_110 Hb_001635_090 Hb_001635_090 Hb_001408_040--Hb_001635_090 Hb_001408_040--Hb_001248_060 Hb_002205_110 Hb_002205_110 Hb_001408_040--Hb_002205_110 Hb_002028_210 Hb_002028_210 Hb_001408_040--Hb_002028_210 Hb_001408_040--Hb_010381_090 Hb_007416_340--Hb_003125_120 Hb_003938_090 Hb_003938_090 Hb_007416_340--Hb_003938_090 Hb_007416_340--Hb_008453_140 Hb_001946_400 Hb_001946_400 Hb_007416_340--Hb_001946_400 Hb_001922_150 Hb_001922_150 Hb_007416_340--Hb_001922_150 Hb_000334_280 Hb_000334_280 Hb_003125_120--Hb_000334_280 Hb_000403_050 Hb_000403_050 Hb_003125_120--Hb_000403_050 Hb_001163_050 Hb_001163_050 Hb_003125_120--Hb_001163_050 Hb_003125_120--Hb_001142_030 Hb_000975_040 Hb_000975_040 Hb_000696_230--Hb_000975_040 Hb_000441_120 Hb_000441_120 Hb_000696_230--Hb_000441_120 Hb_000696_230--Hb_001408_040 Hb_005867_070 Hb_005867_070 Hb_000696_230--Hb_005867_070 Hb_003464_090 Hb_003464_090 Hb_000696_230--Hb_003464_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.1247 35.7421 29.5821 37.0275 40.147 42.8306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.0997 39.8316 29.3223 30.8161 30.2428

CAGE analysis