Hb_000484_050

Information

Type -
Description -
Location Contig484: 106926-110917
Sequence    

Annotation

kegg
ID cic:CICLE_v10028549mg
description hypothetical protein
nr
ID XP_006422564.1
description hypothetical protein CICLE_v10028549mg [Citrus clementina]
swissprot
ID A6T923
description FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hpxO PE=1 SV=1
trembl
ID V4U962
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028549mg PE=4 SV=1
Gene Ontology
ID GO:0016491
description zeaxanthin chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000484_050 0.0 - - hypothetical protein CICLE_v10028549mg [Citrus clementina]
2 Hb_007658_030 0.0073440967 - - PREDICTED: lupeol synthase-like isoform X1 [Populus euphratica]
3 Hb_011909_130 0.0180238717 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
4 Hb_030593_010 0.0413718874 - - hypothetical protein JCGZ_06063 [Jatropha curcas]
5 Hb_034558_010 0.0461094357 - - -
6 Hb_001766_090 0.05091053 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
7 Hb_011639_130 0.0545689673 - - mads box protein, putative [Ricinus communis]
8 Hb_004829_050 0.0559582922 - - hypothetical protein TRIUR3_09654 [Triticum urartu]
9 Hb_023827_010 0.0584646786 - - Cucumber peeling cupredoxin, putative [Ricinus communis]
10 Hb_128894_010 0.0617862655 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001403_100 0.0636967581 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
12 Hb_001104_260 0.0641430426 - - hypothetical protein JCGZ_23628 [Jatropha curcas]
13 Hb_009740_010 0.0738862971 - - receptor-kinase, putative [Ricinus communis]
14 Hb_005204_030 0.0741470746 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
15 Hb_106595_010 0.076872426 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
16 Hb_008078_040 0.0783070347 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
17 Hb_000756_040 0.0796633519 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
18 Hb_000764_060 0.083705841 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
19 Hb_030312_060 0.0840134397 - - PREDICTED: uncharacterized protein LOC105634226 [Jatropha curcas]
20 Hb_007676_070 0.0851592602 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]

Gene co-expression network

sample Hb_000484_050 Hb_000484_050 Hb_007658_030 Hb_007658_030 Hb_000484_050--Hb_007658_030 Hb_011909_130 Hb_011909_130 Hb_000484_050--Hb_011909_130 Hb_030593_010 Hb_030593_010 Hb_000484_050--Hb_030593_010 Hb_034558_010 Hb_034558_010 Hb_000484_050--Hb_034558_010 Hb_001766_090 Hb_001766_090 Hb_000484_050--Hb_001766_090 Hb_011639_130 Hb_011639_130 Hb_000484_050--Hb_011639_130 Hb_007658_030--Hb_011909_130 Hb_007658_030--Hb_034558_010 Hb_007658_030--Hb_030593_010 Hb_007658_030--Hb_001766_090 Hb_128894_010 Hb_128894_010 Hb_007658_030--Hb_128894_010 Hb_011909_130--Hb_011639_130 Hb_004829_050 Hb_004829_050 Hb_011909_130--Hb_004829_050 Hb_001403_100 Hb_001403_100 Hb_011909_130--Hb_001403_100 Hb_001104_260 Hb_001104_260 Hb_011909_130--Hb_001104_260 Hb_023827_010 Hb_023827_010 Hb_030593_010--Hb_023827_010 Hb_030593_010--Hb_001766_090 Hb_030593_010--Hb_011909_130 Hb_009740_010 Hb_009740_010 Hb_030593_010--Hb_009740_010 Hb_034558_010--Hb_128894_010 Hb_106595_010 Hb_106595_010 Hb_034558_010--Hb_106595_010 Hb_034558_010--Hb_001766_090 Hb_044724_020 Hb_044724_020 Hb_034558_010--Hb_044724_020 Hb_001766_090--Hb_023827_010 Hb_001766_090--Hb_128894_010 Hb_011639_130--Hb_004829_050 Hb_011639_130--Hb_001403_100 Hb_011639_130--Hb_001104_260 Hb_005204_030 Hb_005204_030 Hb_011639_130--Hb_005204_030 Hb_008078_040 Hb_008078_040 Hb_011639_130--Hb_008078_040 Hb_000756_040 Hb_000756_040 Hb_011639_130--Hb_000756_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.853799 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.074363 0

CAGE analysis