Hb_000484_130

Information

Type -
Description -
Location Contig484: 243948-257114
Sequence    

Annotation

kegg
ID rcu:RCOM_1646720
description splicing factor, putative
nr
ID XP_002516388.1
description splicing factor, putative [Ricinus communis]
swissprot
ID Q5RC80
description RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
trembl
ID B9RRL9
description Splicing factor, putative OS=Ricinus communis GN=RCOM_1646720 PE=4 SV=1
Gene Ontology
ID GO:0005634
description rna-binding protein 39

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44910: 243981-257116
cDNA
(Sanger)
(ID:Location)		 023_G10.ab1: 248886-256343 , 044_J12.ab1: 255957-257116

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000484_130 0.0 - - splicing factor, putative [Ricinus communis]
2 Hb_022256_020 0.0536906611 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Jatropha curcas]
3 Hb_001359_050 0.0575963089 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003849_110 0.057961214 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
5 Hb_012239_020 0.0623332385 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
6 Hb_001221_110 0.0650678182 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
7 Hb_003464_090 0.0655301413 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
8 Hb_000738_020 0.0687879471 - - zinc finger protein, putative [Ricinus communis]
9 Hb_062226_130 0.070942172 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
10 Hb_164390_010 0.0715278599 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
11 Hb_000926_090 0.0719062184 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
12 Hb_004916_010 0.0751914316 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
13 Hb_000173_280 0.0768781725 - - Speckle-type POZ protein, putative [Ricinus communis]
14 Hb_000029_060 0.077442409 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
15 Hb_164010_040 0.0782361296 - - serine/threonine protein kinase, putative [Ricinus communis]
16 Hb_006588_210 0.0800685853 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
17 Hb_001408_140 0.0800923064 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
18 Hb_010068_080 0.0808703219 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
19 Hb_008725_230 0.0809984667 - - PREDICTED: CTP synthase [Jatropha curcas]
20 Hb_000359_040 0.0815769815 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000484_130 Hb_000484_130 Hb_022256_020 Hb_022256_020 Hb_000484_130--Hb_022256_020 Hb_001359_050 Hb_001359_050 Hb_000484_130--Hb_001359_050 Hb_003849_110 Hb_003849_110 Hb_000484_130--Hb_003849_110 Hb_012239_020 Hb_012239_020 Hb_000484_130--Hb_012239_020 Hb_001221_110 Hb_001221_110 Hb_000484_130--Hb_001221_110 Hb_003464_090 Hb_003464_090 Hb_000484_130--Hb_003464_090 Hb_002675_130 Hb_002675_130 Hb_022256_020--Hb_002675_130 Hb_002234_090 Hb_002234_090 Hb_022256_020--Hb_002234_090 Hb_004916_010 Hb_004916_010 Hb_022256_020--Hb_004916_010 Hb_033772_030 Hb_033772_030 Hb_022256_020--Hb_033772_030 Hb_002818_030 Hb_002818_030 Hb_022256_020--Hb_002818_030 Hb_024958_010 Hb_024958_010 Hb_001359_050--Hb_024958_010 Hb_008725_230 Hb_008725_230 Hb_001359_050--Hb_008725_230 Hb_001359_050--Hb_001221_110 Hb_006570_080 Hb_006570_080 Hb_001359_050--Hb_006570_080 Hb_001359_050--Hb_003464_090 Hb_000173_280 Hb_000173_280 Hb_001359_050--Hb_000173_280 Hb_003849_110--Hb_003464_090 Hb_003428_010 Hb_003428_010 Hb_003849_110--Hb_003428_010 Hb_019863_070 Hb_019863_070 Hb_003849_110--Hb_019863_070 Hb_000029_060 Hb_000029_060 Hb_003849_110--Hb_000029_060 Hb_003849_110--Hb_004916_010 Hb_003849_110--Hb_002818_030 Hb_000738_020 Hb_000738_020 Hb_012239_020--Hb_000738_020 Hb_000086_420 Hb_000086_420 Hb_012239_020--Hb_000086_420 Hb_004994_240 Hb_004994_240 Hb_012239_020--Hb_004994_240 Hb_001300_010 Hb_001300_010 Hb_012239_020--Hb_001300_010 Hb_000327_140 Hb_000327_140 Hb_012239_020--Hb_000327_140 Hb_000649_110 Hb_000649_110 Hb_001221_110--Hb_000649_110 Hb_001221_110--Hb_000173_280 Hb_164390_010 Hb_164390_010 Hb_001221_110--Hb_164390_010 Hb_001221_110--Hb_024958_010 Hb_007163_120 Hb_007163_120 Hb_003464_090--Hb_007163_120 Hb_001408_140 Hb_001408_140 Hb_003464_090--Hb_001408_140 Hb_005653_090 Hb_005653_090 Hb_003464_090--Hb_005653_090 Hb_007765_110 Hb_007765_110 Hb_003464_090--Hb_007765_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0422 19.0222 16.3298 12.365 8.70373 10.664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7963 16.3741 14.8629 14.6326 9.89781

CAGE analysis