Hb_000486_060

Information

Type -
Description -
Location Contig486: 126840-128386
Sequence    

Annotation

kegg
ID tcc:TCM_021785
description Yos1-like protein
nr
ID XP_006573329.1
description PREDICTED: immediate early response 3-interacting protein 1-like isoform X2 [Glycine max]
swissprot
ID O13825
description Protein transport protein yos1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=yos1 PE=3 SV=1
trembl
ID K7K345
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein transport protein yos1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44984: 127059-128302
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000486_060 0.0 - - PREDICTED: immediate early response 3-interacting protein 1-like isoform X2 [Glycine max]
2 Hb_171788_010 0.1347037102 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
3 Hb_002903_080 0.1378943686 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
4 Hb_000198_070 0.1391188064 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
5 Hb_002815_060 0.1418769867 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
6 Hb_005714_130 0.1464705112 transcription factor TF Family: C2H2 unknown [Populus trichocarpa x Populus deltoides]
7 Hb_083043_010 0.1471875771 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
8 Hb_002742_070 0.1489907632 - - PREDICTED: villin-4-like [Jatropha curcas]
9 Hb_001575_040 0.1502091165 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 isoform X2 [Jatropha curcas]
10 Hb_001767_120 0.1513938095 - - -
11 Hb_003711_040 0.1521876974 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
12 Hb_000441_160 0.1527335739 - - ARF GTPase activator, putative [Ricinus communis]
13 Hb_121467_010 0.1538456981 - - tubulin-specific chaperone E, putative [Ricinus communis]
14 Hb_007380_090 0.1552867788 - - -
15 Hb_012132_040 0.1557501611 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
16 Hb_010565_010 0.1560308161 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
17 Hb_006663_070 0.159291697 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]
18 Hb_178041_010 0.1598793493 - - PREDICTED: signal peptide peptidase-like 2 [Populus euphratica]
19 Hb_019053_020 0.1602819522 - - hypothetical protein MIMGU_mgv1a0105441mg, partial [Erythranthe guttata]
20 Hb_011206_010 0.1615442013 - - PREDICTED: something about silencing protein 10 isoform X2 [Vitis vinifera]

Gene co-expression network

sample Hb_000486_060 Hb_000486_060 Hb_171788_010 Hb_171788_010 Hb_000486_060--Hb_171788_010 Hb_002903_080 Hb_002903_080 Hb_000486_060--Hb_002903_080 Hb_000198_070 Hb_000198_070 Hb_000486_060--Hb_000198_070 Hb_002815_060 Hb_002815_060 Hb_000486_060--Hb_002815_060 Hb_005714_130 Hb_005714_130 Hb_000486_060--Hb_005714_130 Hb_083043_010 Hb_083043_010 Hb_000486_060--Hb_083043_010 Hb_139859_010 Hb_139859_010 Hb_171788_010--Hb_139859_010 Hb_171788_010--Hb_083043_010 Hb_006455_110 Hb_006455_110 Hb_171788_010--Hb_006455_110 Hb_003711_040 Hb_003711_040 Hb_171788_010--Hb_003711_040 Hb_030328_010 Hb_030328_010 Hb_171788_010--Hb_030328_010 Hb_000436_040 Hb_000436_040 Hb_002903_080--Hb_000436_040 Hb_004096_100 Hb_004096_100 Hb_002903_080--Hb_004096_100 Hb_081879_030 Hb_081879_030 Hb_002903_080--Hb_081879_030 Hb_003464_020 Hb_003464_020 Hb_002903_080--Hb_003464_020 Hb_010931_040 Hb_010931_040 Hb_002903_080--Hb_010931_040 Hb_000347_130 Hb_000347_130 Hb_002903_080--Hb_000347_130 Hb_000606_080 Hb_000606_080 Hb_000198_070--Hb_000606_080 Hb_012132_040 Hb_012132_040 Hb_000198_070--Hb_012132_040 Hb_013691_020 Hb_013691_020 Hb_000198_070--Hb_013691_020 Hb_002067_020 Hb_002067_020 Hb_000198_070--Hb_002067_020 Hb_000364_080 Hb_000364_080 Hb_000198_070--Hb_000364_080 Hb_000523_090 Hb_000523_090 Hb_000198_070--Hb_000523_090 Hb_002742_070 Hb_002742_070 Hb_002815_060--Hb_002742_070 Hb_011206_010 Hb_011206_010 Hb_002815_060--Hb_011206_010 Hb_001731_020 Hb_001731_020 Hb_002815_060--Hb_001731_020 Hb_031069_020 Hb_031069_020 Hb_002815_060--Hb_031069_020 Hb_002815_060--Hb_002903_080 Hb_001040_120 Hb_001040_120 Hb_002815_060--Hb_001040_120 Hb_010565_010 Hb_010565_010 Hb_005714_130--Hb_010565_010 Hb_002007_180 Hb_002007_180 Hb_005714_130--Hb_002007_180 Hb_001767_120 Hb_001767_120 Hb_005714_130--Hb_001767_120 Hb_041392_010 Hb_041392_010 Hb_005714_130--Hb_041392_010 Hb_005367_010 Hb_005367_010 Hb_005714_130--Hb_005367_010 Hb_128998_010 Hb_128998_010 Hb_005714_130--Hb_128998_010 Hb_083043_010--Hb_003711_040 Hb_003581_020 Hb_003581_020 Hb_083043_010--Hb_003581_020 Hb_002811_120 Hb_002811_120 Hb_083043_010--Hb_002811_120 Hb_004881_050 Hb_004881_050 Hb_083043_010--Hb_004881_050 Hb_006114_020 Hb_006114_020 Hb_083043_010--Hb_006114_020 Hb_150204_010 Hb_150204_010 Hb_083043_010--Hb_150204_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.9543 10.429 16.1875 26.9763 30.7717 108.496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4689 13.5919 7.82907 21.3527 14.6971

CAGE analysis