Hb_000486_070

Information

Type -
Description -
Location Contig486: 132080-135229
Sequence    

Annotation

kegg
ID vvi:100247795
description uncharacterized protein At1g04910
nr
ID KDP24505.1
description hypothetical protein JCGZ_25069 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067JWW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25069 PE=4 SV=1
Gene Ontology
ID GO:0016757
description gdp-fucose o-fucosyltransferase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000486_070 0.0 - - hypothetical protein JCGZ_25069 [Jatropha curcas]
2 Hb_002272_010 0.2149920865 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007379_020 0.217211162 - - hypothetical protein JCGZ_25958 [Jatropha curcas]
4 Hb_002110_240 0.2219557391 - - clathrin assembly protein, putative [Ricinus communis]
5 Hb_000256_130 0.2244617652 - - hypothetical protein 21 [Hevea brasiliensis]
6 Hb_002205_010 0.229735478 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
7 Hb_003014_020 0.2383687644 - - electron transporter, putative [Ricinus communis]
8 Hb_009838_060 0.2468625493 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006916_200 0.2474117466 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
10 Hb_000270_770 0.2485404544 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
11 Hb_000008_110 0.2492727729 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Gossypium raimondii]
12 Hb_009233_030 0.2516935673 - - protein binding protein, putative [Ricinus communis]
13 Hb_000086_340 0.2542726562 - - PREDICTED: uncharacterized protein LOC100253191 [Vitis vinifera]
14 Hb_001433_140 0.2564785081 - - PREDICTED: phospholipase D p1 [Jatropha curcas]
15 Hb_008173_030 0.2566074027 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
16 Hb_000122_050 0.2566096495 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001096_100 0.2567930246 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002639_100 0.2568495076 - - dehydrin [Hevea brasiliensis]
19 Hb_012107_010 0.2582126549 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
20 Hb_012760_010 0.2599414405 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000486_070 Hb_000486_070 Hb_002272_010 Hb_002272_010 Hb_000486_070--Hb_002272_010 Hb_007379_020 Hb_007379_020 Hb_000486_070--Hb_007379_020 Hb_002110_240 Hb_002110_240 Hb_000486_070--Hb_002110_240 Hb_000256_130 Hb_000256_130 Hb_000486_070--Hb_000256_130 Hb_002205_010 Hb_002205_010 Hb_000486_070--Hb_002205_010 Hb_003014_020 Hb_003014_020 Hb_000486_070--Hb_003014_020 Hb_006096_010 Hb_006096_010 Hb_002272_010--Hb_006096_010 Hb_009233_030 Hb_009233_030 Hb_002272_010--Hb_009233_030 Hb_002272_010--Hb_000256_130 Hb_003225_030 Hb_003225_030 Hb_002272_010--Hb_003225_030 Hb_000649_240 Hb_000649_240 Hb_002272_010--Hb_000649_240 Hb_009838_060 Hb_009838_060 Hb_007379_020--Hb_009838_060 Hb_002918_150 Hb_002918_150 Hb_007379_020--Hb_002918_150 Hb_005400_040 Hb_005400_040 Hb_007379_020--Hb_005400_040 Hb_006916_200 Hb_006916_200 Hb_007379_020--Hb_006916_200 Hb_001096_100 Hb_001096_100 Hb_007379_020--Hb_001096_100 Hb_008066_070 Hb_008066_070 Hb_007379_020--Hb_008066_070 Hb_002110_240--Hb_002205_010 Hb_008173_030 Hb_008173_030 Hb_002110_240--Hb_008173_030 Hb_002110_240--Hb_000256_130 Hb_020400_040 Hb_020400_040 Hb_002110_240--Hb_020400_040 Hb_000343_180 Hb_000343_180 Hb_002110_240--Hb_000343_180 Hb_002110_240--Hb_009233_030 Hb_000023_250 Hb_000023_250 Hb_000256_130--Hb_000023_250 Hb_000364_040 Hb_000364_040 Hb_000256_130--Hb_000364_040 Hb_000976_280 Hb_000976_280 Hb_000256_130--Hb_000976_280 Hb_012107_010 Hb_012107_010 Hb_000256_130--Hb_012107_010 Hb_000634_070 Hb_000634_070 Hb_000256_130--Hb_000634_070 Hb_005663_070 Hb_005663_070 Hb_000256_130--Hb_005663_070 Hb_002205_010--Hb_020400_040 Hb_000179_240 Hb_000179_240 Hb_002205_010--Hb_000179_240 Hb_002205_010--Hb_000256_130 Hb_001472_130 Hb_001472_130 Hb_002205_010--Hb_001472_130 Hb_001123_200 Hb_001123_200 Hb_002205_010--Hb_001123_200 Hb_004450_050 Hb_004450_050 Hb_003014_020--Hb_004450_050 Hb_024682_020 Hb_024682_020 Hb_003014_020--Hb_024682_020 Hb_000891_030 Hb_000891_030 Hb_003014_020--Hb_000891_030 Hb_010519_040 Hb_010519_040 Hb_003014_020--Hb_010519_040 Hb_091889_020 Hb_091889_020 Hb_003014_020--Hb_091889_020 Hb_006441_020 Hb_006441_020 Hb_003014_020--Hb_006441_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.30442 3.53169 0.417775 1.28835 0.00984496 0.126472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.3108 1.26033 0.46306 0.449257 0.0396917

CAGE analysis