Hb_000487_080

Information

Type -
Description -
Location Contig487: 116178-119309
Sequence    

Annotation

kegg
ID rcu:RCOM_1575520
description Potassium transporter, putative
nr
ID XP_012087463.1
description PREDICTED: probable potassium transporter 13 [Jatropha curcas]
swissprot
ID Q652J4
description Probable potassium transporter 13 OS=Oryza sativa subsp. japonica GN=HAK13 PE=2 SV=1
trembl
ID B9RI17
description Potassium transporter OS=Ricinus communis GN=RCOM_1575520 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable potassium transporter 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44992: 117055-117329 , PASA_asmbl_44993: 117055-117356 , PASA_asmbl_44994: 117404-117541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_080 0.0 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
2 Hb_001426_020 0.0256632942 - - hypothetical protein CICLE_v10033594mg, partial [Citrus clementina]
3 Hb_016734_100 0.0354493595 - - -
4 Hb_001642_020 0.0444502179 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
5 Hb_001031_140 0.0515002689 - - PREDICTED: GDSL esterase/lipase At5g33370-like [Jatropha curcas]
6 Hb_012035_010 0.0559416019 - - hypothetical protein JCGZ_21143 [Jatropha curcas]
7 Hb_163566_010 0.0649645405 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Amborella trichopoda]
8 Hb_001141_180 0.0695204786 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
9 Hb_004880_020 0.0736501512 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Jatropha curcas]
10 Hb_005833_010 0.0743554263 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
11 Hb_001652_100 0.0746321992 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
12 Hb_002043_020 0.0750320107 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
13 Hb_126714_010 0.0762959385 - - hypothetical protein CISIN_1g041016mg, partial [Citrus sinensis]
14 Hb_007850_020 0.0767385755 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007120_120 0.0777698248 - - protein binding protein, putative [Ricinus communis]
16 Hb_009663_020 0.077821635 - - -
17 Hb_008147_020 0.0807449668 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
18 Hb_006588_140 0.0816441783 - - PREDICTED: uncharacterized protein LOC104906772 [Beta vulgaris subsp. vulgaris]
19 Hb_000538_090 0.0825601664 transcription factor TF Family: NAC hypothetical protein RCOM_1603380 [Ricinus communis]
20 Hb_000985_160 0.0880973449 - - PREDICTED: cytochrome P450 724B1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000487_080 Hb_000487_080 Hb_001426_020 Hb_001426_020 Hb_000487_080--Hb_001426_020 Hb_016734_100 Hb_016734_100 Hb_000487_080--Hb_016734_100 Hb_001642_020 Hb_001642_020 Hb_000487_080--Hb_001642_020 Hb_001031_140 Hb_001031_140 Hb_000487_080--Hb_001031_140 Hb_012035_010 Hb_012035_010 Hb_000487_080--Hb_012035_010 Hb_163566_010 Hb_163566_010 Hb_000487_080--Hb_163566_010 Hb_001426_020--Hb_016734_100 Hb_001426_020--Hb_001642_020 Hb_001426_020--Hb_001031_140 Hb_001426_020--Hb_163566_010 Hb_005833_010 Hb_005833_010 Hb_001426_020--Hb_005833_010 Hb_016734_100--Hb_001642_020 Hb_016734_100--Hb_001031_140 Hb_007120_120 Hb_007120_120 Hb_016734_100--Hb_007120_120 Hb_009663_020 Hb_009663_020 Hb_016734_100--Hb_009663_020 Hb_001642_020--Hb_001031_140 Hb_001141_180 Hb_001141_180 Hb_001642_020--Hb_001141_180 Hb_001652_100 Hb_001652_100 Hb_001642_020--Hb_001652_100 Hb_001031_140--Hb_001141_180 Hb_001728_070 Hb_001728_070 Hb_001031_140--Hb_001728_070 Hb_001206_110 Hb_001206_110 Hb_001031_140--Hb_001206_110 Hb_002043_020 Hb_002043_020 Hb_001031_140--Hb_002043_020 Hb_007850_020 Hb_007850_020 Hb_012035_010--Hb_007850_020 Hb_000985_160 Hb_000985_160 Hb_012035_010--Hb_000985_160 Hb_004204_060 Hb_004204_060 Hb_012035_010--Hb_004204_060 Hb_012035_010--Hb_016734_100 Hb_008147_020 Hb_008147_020 Hb_012035_010--Hb_008147_020 Hb_163566_010--Hb_005833_010 Hb_163566_010--Hb_009663_020 Hb_163566_010--Hb_016734_100 Hb_024071_030 Hb_024071_030 Hb_163566_010--Hb_024071_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.83008 1.52889 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00651457 1.70029

CAGE analysis