Hb_000487_110

Information

Type -
Description -
Location Contig487: 127764-133548
Sequence    

Annotation

kegg
ID rcu:RCOM_1575560
description Cyclin-L2, putative
nr
ID XP_012087388.1
description PREDICTED: cyclin-T1-3-like [Jatropha curcas]
swissprot
ID Q9FKE6
description Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=1 SV=2
trembl
ID A0A067JZY2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22634 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin-t1-5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44996: 127732-130545 , PASA_asmbl_44997: 129289-129623
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_110 0.0 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
2 Hb_000034_100 0.0581259699 - - dnajc14 protein, putative [Ricinus communis]
3 Hb_000613_090 0.0753166157 - - PREDICTED: uncharacterized protein LOC105641542 isoform X1 [Jatropha curcas]
4 Hb_008406_110 0.0771324794 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
5 Hb_000038_170 0.0780999855 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
6 Hb_005276_210 0.0808218621 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
7 Hb_054865_100 0.0820170363 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
8 Hb_033720_010 0.0829590101 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
9 Hb_001390_110 0.0830539773 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
10 Hb_002518_280 0.0844653373 - - phosphate transporter [Manihot esculenta]
11 Hb_000853_420 0.085114727 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_000096_070 0.0851236873 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
13 Hb_001006_140 0.086125393 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
14 Hb_000879_200 0.0871653678 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
15 Hb_003029_030 0.087814343 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
16 Hb_000365_120 0.0878654783 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
17 Hb_000051_070 0.0878945335 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
18 Hb_005505_050 0.0892104609 - - PREDICTED: uncharacterized protein LOC105639309 isoform X2 [Jatropha curcas]
19 Hb_005694_110 0.0911829093 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]
20 Hb_000794_050 0.0920642201 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_000487_110 Hb_000487_110 Hb_000034_100 Hb_000034_100 Hb_000487_110--Hb_000034_100 Hb_000613_090 Hb_000613_090 Hb_000487_110--Hb_000613_090 Hb_008406_110 Hb_008406_110 Hb_000487_110--Hb_008406_110 Hb_000038_170 Hb_000038_170 Hb_000487_110--Hb_000038_170 Hb_005276_210 Hb_005276_210 Hb_000487_110--Hb_005276_210 Hb_054865_100 Hb_054865_100 Hb_000487_110--Hb_054865_100 Hb_000034_100--Hb_005276_210 Hb_005694_110 Hb_005694_110 Hb_000034_100--Hb_005694_110 Hb_000096_070 Hb_000096_070 Hb_000034_100--Hb_000096_070 Hb_000034_100--Hb_054865_100 Hb_005245_130 Hb_005245_130 Hb_000034_100--Hb_005245_130 Hb_000853_420 Hb_000853_420 Hb_000613_090--Hb_000853_420 Hb_000613_090--Hb_000038_170 Hb_011671_430 Hb_011671_430 Hb_000613_090--Hb_011671_430 Hb_022250_030 Hb_022250_030 Hb_000613_090--Hb_022250_030 Hb_000613_090--Hb_000034_100 Hb_001390_110 Hb_001390_110 Hb_008406_110--Hb_001390_110 Hb_000926_190 Hb_000926_190 Hb_008406_110--Hb_000926_190 Hb_008406_110--Hb_005276_210 Hb_000334_270 Hb_000334_270 Hb_008406_110--Hb_000334_270 Hb_003849_250 Hb_003849_250 Hb_008406_110--Hb_003849_250 Hb_007520_030 Hb_007520_030 Hb_008406_110--Hb_007520_030 Hb_002518_280 Hb_002518_280 Hb_000038_170--Hb_002518_280 Hb_000038_170--Hb_011671_430 Hb_001595_030 Hb_001595_030 Hb_000038_170--Hb_001595_030 Hb_003428_030 Hb_003428_030 Hb_000038_170--Hb_003428_030 Hb_000879_200 Hb_000879_200 Hb_000038_170--Hb_000879_200 Hb_001006_140 Hb_001006_140 Hb_000038_170--Hb_001006_140 Hb_005276_210--Hb_054865_100 Hb_000300_060 Hb_000300_060 Hb_005276_210--Hb_000300_060 Hb_002477_280 Hb_002477_280 Hb_005276_210--Hb_002477_280 Hb_066182_010 Hb_066182_010 Hb_005276_210--Hb_066182_010 Hb_003952_070 Hb_003952_070 Hb_005276_210--Hb_003952_070 Hb_054865_100--Hb_066182_010 Hb_006620_020 Hb_006620_020 Hb_054865_100--Hb_006620_020 Hb_000327_120 Hb_000327_120 Hb_054865_100--Hb_000327_120 Hb_000174_110 Hb_000174_110 Hb_054865_100--Hb_000174_110 Hb_000645_050 Hb_000645_050 Hb_054865_100--Hb_000645_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.9739 22.0515 17.9513 11.228 41.2896 25.3848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.3593 26.1179 21.5471 12.9066 19.1806

CAGE analysis