Hb_000487_130

Information

Type transcription factor
Description TF Family: Orphans
Location Contig487: 143070-144316
Sequence    

Annotation

kegg
ID rcu:RCOM_1575600
description hypothetical protein
nr
ID XP_002513394.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SK53
description Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1
trembl
ID B9RI25
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1575600 PE=4 SV=1
Gene Ontology
ID GO:0009987
description activator of spomin::

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_130 0.0 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
2 Hb_025193_010 0.1376205317 - - PREDICTED: indole-3-acetic acid-amido synthetase GH3.17-like isoform X1 [Jatropha curcas]
3 Hb_000152_730 0.140796413 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004235_040 0.1449183506 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
5 Hb_001369_490 0.1464477884 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 33 [Jatropha curcas]
6 Hb_026196_020 0.1501866664 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
7 Hb_002999_020 0.1523783187 - - PREDICTED: ribonuclease 3-like [Jatropha curcas]
8 Hb_002228_120 0.1532167144 - - potassium channel beta, putative [Ricinus communis]
9 Hb_000802_040 0.154730223 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
10 Hb_000742_040 0.1592045381 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
11 Hb_124677_070 0.1596191628 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
12 Hb_000815_010 0.1616230884 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105117338 [Populus euphratica]
13 Hb_153258_030 0.1667382495 - - hypothetical protein RCOM_0853150 [Ricinus communis]
14 Hb_001141_270 0.1669056464 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
15 Hb_009662_040 0.1670371172 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
16 Hb_188742_010 0.1671676904 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
17 Hb_010327_040 0.1681832696 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
18 Hb_002811_070 0.1709682689 - - Cytidine/deoxycytidylate deaminase family protein isoform 1 [Theobroma cacao]
19 Hb_001623_560 0.1716761161 - - late embryogenesis abundant protein group 9 protein [Arachis hypogaea]
20 Hb_000796_110 0.1732023358 - - PREDICTED: probable pectinesterase 53 [Populus euphratica]

Gene co-expression network

sample Hb_000487_130 Hb_000487_130 Hb_025193_010 Hb_025193_010 Hb_000487_130--Hb_025193_010 Hb_000152_730 Hb_000152_730 Hb_000487_130--Hb_000152_730 Hb_004235_040 Hb_004235_040 Hb_000487_130--Hb_004235_040 Hb_001369_490 Hb_001369_490 Hb_000487_130--Hb_001369_490 Hb_026196_020 Hb_026196_020 Hb_000487_130--Hb_026196_020 Hb_002999_020 Hb_002999_020 Hb_000487_130--Hb_002999_020 Hb_001673_090 Hb_001673_090 Hb_025193_010--Hb_001673_090 Hb_002263_050 Hb_002263_050 Hb_025193_010--Hb_002263_050 Hb_009662_040 Hb_009662_040 Hb_025193_010--Hb_009662_040 Hb_004933_010 Hb_004933_010 Hb_025193_010--Hb_004933_010 Hb_000622_230 Hb_000622_230 Hb_025193_010--Hb_000622_230 Hb_001246_080 Hb_001246_080 Hb_000152_730--Hb_001246_080 Hb_007292_060 Hb_007292_060 Hb_000152_730--Hb_007292_060 Hb_002326_090 Hb_002326_090 Hb_000152_730--Hb_002326_090 Hb_090210_010 Hb_090210_010 Hb_000152_730--Hb_090210_010 Hb_011218_010 Hb_011218_010 Hb_000152_730--Hb_011218_010 Hb_000392_080 Hb_000392_080 Hb_004235_040--Hb_000392_080 Hb_002757_020 Hb_002757_020 Hb_004235_040--Hb_002757_020 Hb_014508_020 Hb_014508_020 Hb_004235_040--Hb_014508_020 Hb_000352_210 Hb_000352_210 Hb_004235_040--Hb_000352_210 Hb_002028_250 Hb_002028_250 Hb_004235_040--Hb_002028_250 Hb_010327_040 Hb_010327_040 Hb_004235_040--Hb_010327_040 Hb_188742_010 Hb_188742_010 Hb_001369_490--Hb_188742_010 Hb_001369_490--Hb_026196_020 Hb_000896_030 Hb_000896_030 Hb_001369_490--Hb_000896_030 Hb_124677_070 Hb_124677_070 Hb_001369_490--Hb_124677_070 Hb_000742_040 Hb_000742_040 Hb_001369_490--Hb_000742_040 Hb_000802_040 Hb_000802_040 Hb_001369_490--Hb_000802_040 Hb_026196_020--Hb_188742_010 Hb_026196_020--Hb_124677_070 Hb_026196_020--Hb_000802_040 Hb_026196_020--Hb_010327_040 Hb_026196_020--Hb_000742_040 Hb_026196_020--Hb_000896_030 Hb_153258_030 Hb_153258_030 Hb_002999_020--Hb_153258_030 Hb_002999_020--Hb_000742_040 Hb_000796_110 Hb_000796_110 Hb_002999_020--Hb_000796_110 Hb_001416_120 Hb_001416_120 Hb_002999_020--Hb_001416_120 Hb_002999_020--Hb_124677_070 Hb_016734_110 Hb_016734_110 Hb_002999_020--Hb_016734_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.600403 2.23212 0 0.0345096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0941013 0.021014 0.10444

CAGE analysis