Hb_000487_140

Information

Type transcription factor
Description TF Family: LOB
Location Contig487: 150374-153782
Sequence    

Annotation

kegg
ID rcu:RCOM_1575710
description LOB domain-containing protein, putative
nr
ID XP_002513395.1
description LOB domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9SHE9
description LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1
trembl
ID B9RI26
description LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1575710 PE=4 SV=1
Gene Ontology
ID GO:0009855
description lob domain-containing protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45001: 150408-153744
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_140 0.0 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
2 Hb_003058_180 0.1018136152 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
3 Hb_003805_080 0.1051073056 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
4 Hb_006120_010 0.1133362721 - - invertase inhibitor [Manihot esculenta]
5 Hb_000761_030 0.1135142978 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
6 Hb_001863_080 0.1154544061 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
7 Hb_188923_010 0.1171539035 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
8 Hb_000230_160 0.1196735456 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
9 Hb_012762_070 0.1261196667 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]
10 Hb_001638_110 0.130516429 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000286_030 0.1313522488 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
12 Hb_000081_020 0.1314307496 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
13 Hb_003787_060 0.1325353736 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
14 Hb_010326_030 0.1337594493 - - PREDICTED: abscisic acid 8'-hydroxylase 4-like [Jatropha curcas]
15 Hb_005064_040 0.134160811 - - hypothetical protein POPTR_0008s02680g [Populus trichocarpa]
16 Hb_000081_030 0.1365778768 - - BnaC09g05810D [Brassica napus]
17 Hb_000172_740 0.1372810114 - - HXXXD-type acyl-transferase family protein, putative [Theobroma cacao]
18 Hb_012807_140 0.1405648861 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
19 Hb_028008_030 0.1428904053 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
20 Hb_002499_020 0.1437366336 - - hevamine-A precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000487_140 Hb_000487_140 Hb_003058_180 Hb_003058_180 Hb_000487_140--Hb_003058_180 Hb_003805_080 Hb_003805_080 Hb_000487_140--Hb_003805_080 Hb_006120_010 Hb_006120_010 Hb_000487_140--Hb_006120_010 Hb_000761_030 Hb_000761_030 Hb_000487_140--Hb_000761_030 Hb_001863_080 Hb_001863_080 Hb_000487_140--Hb_001863_080 Hb_188923_010 Hb_188923_010 Hb_000487_140--Hb_188923_010 Hb_000230_160 Hb_000230_160 Hb_003058_180--Hb_000230_160 Hb_003058_180--Hb_006120_010 Hb_003058_180--Hb_188923_010 Hb_001856_150 Hb_001856_150 Hb_003058_180--Hb_001856_150 Hb_003058_180--Hb_003805_080 Hb_003787_060 Hb_003787_060 Hb_003805_080--Hb_003787_060 Hb_028008_030 Hb_028008_030 Hb_003805_080--Hb_028008_030 Hb_039496_010 Hb_039496_010 Hb_003805_080--Hb_039496_010 Hb_003805_080--Hb_188923_010 Hb_003805_080--Hb_000230_160 Hb_046191_010 Hb_046191_010 Hb_006120_010--Hb_046191_010 Hb_002499_020 Hb_002499_020 Hb_006120_010--Hb_002499_020 Hb_006120_010--Hb_000230_160 Hb_000077_450 Hb_000077_450 Hb_006120_010--Hb_000077_450 Hb_006120_010--Hb_188923_010 Hb_000081_030 Hb_000081_030 Hb_000761_030--Hb_000081_030 Hb_005056_030 Hb_005056_030 Hb_000761_030--Hb_005056_030 Hb_006268_010 Hb_006268_010 Hb_000761_030--Hb_006268_010 Hb_000761_030--Hb_000230_160 Hb_014115_010 Hb_014115_010 Hb_000761_030--Hb_014115_010 Hb_000172_740 Hb_000172_740 Hb_001863_080--Hb_000172_740 Hb_001863_080--Hb_188923_010 Hb_000286_030 Hb_000286_030 Hb_001863_080--Hb_000286_030 Hb_001863_080--Hb_003058_180 Hb_150084_010 Hb_150084_010 Hb_001863_080--Hb_150084_010 Hb_000967_010 Hb_000967_010 Hb_188923_010--Hb_000967_010 Hb_188923_010--Hb_003787_060 Hb_118707_020 Hb_118707_020 Hb_188923_010--Hb_118707_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0278782 6.48373 0.238109 8.81783 0.0541368 0.066248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 19.6165 0.913878

CAGE analysis