Hb_000487_170

Information

Type transcription factor
Description TF Family: NAC
Location Contig487: 182204-184249
Sequence    

Annotation

kegg
ID rcu:RCOM_1575740
description NAC domain-containing protein, putative
nr
ID XP_002513398.1
description NAC domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9SK55
description Transcription factor JUNGBRUNNEN 1 OS=Arabidopsis thaliana GN=JUB1 PE=1 SV=1
trembl
ID B9RI29
description NAC domain-containing protein, putative OS=Ricinus communis GN=RCOM_1575740 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor jungbrunnen 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_170 0.0 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
2 Hb_064398_010 0.0798148123 - - cytochrome P450, putative [Ricinus communis]
3 Hb_010712_020 0.0971202383 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
4 Hb_000411_060 0.1051312409 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
5 Hb_001141_170 0.1058444398 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
6 Hb_002311_050 0.106007673 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
7 Hb_007342_020 0.108947896 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
8 Hb_002917_010 0.1111354981 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
9 Hb_000365_300 0.1123842395 - - PREDICTED: cytochrome P450 714C2-like [Jatropha curcas]
10 Hb_146023_010 0.1152923509 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001047_250 0.1167328847 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
12 Hb_011824_010 0.1167475816 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
13 Hb_001863_290 0.11724278 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
14 Hb_009012_020 0.1176406169 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
15 Hb_001902_180 0.1182860865 - - PREDICTED: uncharacterized protein LOC105129658 [Populus euphratica]
16 Hb_001357_260 0.1204649216 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_021419_060 0.121100563 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
18 Hb_107258_010 0.1255367189 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
19 Hb_000160_230 0.126545209 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
20 Hb_000976_020 0.1265549017 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000487_170 Hb_000487_170 Hb_064398_010 Hb_064398_010 Hb_000487_170--Hb_064398_010 Hb_010712_020 Hb_010712_020 Hb_000487_170--Hb_010712_020 Hb_000411_060 Hb_000411_060 Hb_000487_170--Hb_000411_060 Hb_001141_170 Hb_001141_170 Hb_000487_170--Hb_001141_170 Hb_002311_050 Hb_002311_050 Hb_000487_170--Hb_002311_050 Hb_007342_020 Hb_007342_020 Hb_000487_170--Hb_007342_020 Hb_064398_010--Hb_010712_020 Hb_001863_290 Hb_001863_290 Hb_064398_010--Hb_001863_290 Hb_001442_080 Hb_001442_080 Hb_064398_010--Hb_001442_080 Hb_064398_010--Hb_001141_170 Hb_107258_010 Hb_107258_010 Hb_064398_010--Hb_107258_010 Hb_011824_010 Hb_011824_010 Hb_010712_020--Hb_011824_010 Hb_010712_020--Hb_001863_290 Hb_010712_020--Hb_001141_170 Hb_000160_230 Hb_000160_230 Hb_010712_020--Hb_000160_230 Hb_007810_140 Hb_007810_140 Hb_010712_020--Hb_007810_140 Hb_009012_020 Hb_009012_020 Hb_000411_060--Hb_009012_020 Hb_001902_180 Hb_001902_180 Hb_000411_060--Hb_001902_180 Hb_000101_050 Hb_000101_050 Hb_000411_060--Hb_000101_050 Hb_008080_040 Hb_008080_040 Hb_000411_060--Hb_008080_040 Hb_001357_260 Hb_001357_260 Hb_000411_060--Hb_001357_260 Hb_012019_030 Hb_012019_030 Hb_001141_170--Hb_012019_030 Hb_001114_300 Hb_001114_300 Hb_001141_170--Hb_001114_300 Hb_004195_040 Hb_004195_040 Hb_001141_170--Hb_004195_040 Hb_000859_040 Hb_000859_040 Hb_001141_170--Hb_000859_040 Hb_001141_170--Hb_011824_010 Hb_000365_300 Hb_000365_300 Hb_002311_050--Hb_000365_300 Hb_005731_080 Hb_005731_080 Hb_002311_050--Hb_005731_080 Hb_002311_050--Hb_001141_170 Hb_002311_050--Hb_012019_030 Hb_002311_050--Hb_004195_040 Hb_000813_120 Hb_000813_120 Hb_002311_050--Hb_000813_120 Hb_115007_010 Hb_115007_010 Hb_007342_020--Hb_115007_010 Hb_000537_120 Hb_000537_120 Hb_007342_020--Hb_000537_120 Hb_007342_020--Hb_064398_010 Hb_001114_220 Hb_001114_220 Hb_007342_020--Hb_001114_220 Hb_000483_020 Hb_000483_020 Hb_007342_020--Hb_000483_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.53914 0.0473964 0.0316351 0 0.0220085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.89662 0.0752698

CAGE analysis