Hb_000487_220

Information

Type -
Description -
Location Contig487: 203915-208213
Sequence    

Annotation

kegg
ID rcu:RCOM_1068970
description eukaryotic translation elongation factor, putative
nr
ID XP_002523907.1
description eukaryotic translation elongation factor, putative [Ricinus communis]
swissprot
ID O23755
description Elongation factor 2 OS=Beta vulgaris PE=2 SV=1
trembl
ID B9SD38
description Eukaryotic translation elongation factor, putative OS=Ricinus communis GN=RCOM_1068970 PE=4 SV=1
Gene Ontology
ID GO:0005840
description elongation factor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45017: 204034-208141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_220 0.0 - - eukaryotic translation elongation factor, putative [Ricinus communis]
2 Hb_003029_130 0.0481077743 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
3 Hb_000475_020 0.0675990858 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
4 Hb_000504_150 0.0689334452 - - PREDICTED: nuclear pore complex protein GP210 [Jatropha curcas]
5 Hb_001811_120 0.0748508215 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
6 Hb_004970_160 0.0771861024 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
7 Hb_000209_070 0.0894321606 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
8 Hb_000935_090 0.0902219774 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
9 Hb_001178_150 0.0921979557 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
10 Hb_001196_060 0.0922443461 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
11 Hb_002471_210 0.0924206733 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
12 Hb_001473_090 0.0927158671 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
13 Hb_000347_570 0.0930223929 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
14 Hb_015099_010 0.0930827486 - - PREDICTED: probable glucan 1,3-alpha-glucosidase [Jatropha curcas]
15 Hb_102269_010 0.0944705207 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
16 Hb_001493_040 0.0951209698 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
17 Hb_000363_380 0.0953221904 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
18 Hb_000120_620 0.0956227384 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
19 Hb_002235_160 0.0957510586 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
20 Hb_010315_090 0.0968733276 - - suppressor of ty, putative [Ricinus communis]

Gene co-expression network

sample Hb_000487_220 Hb_000487_220 Hb_003029_130 Hb_003029_130 Hb_000487_220--Hb_003029_130 Hb_000475_020 Hb_000475_020 Hb_000487_220--Hb_000475_020 Hb_000504_150 Hb_000504_150 Hb_000487_220--Hb_000504_150 Hb_001811_120 Hb_001811_120 Hb_000487_220--Hb_001811_120 Hb_004970_160 Hb_004970_160 Hb_000487_220--Hb_004970_160 Hb_000209_070 Hb_000209_070 Hb_000487_220--Hb_000209_070 Hb_015099_010 Hb_015099_010 Hb_003029_130--Hb_015099_010 Hb_001473_090 Hb_001473_090 Hb_003029_130--Hb_001473_090 Hb_000935_090 Hb_000935_090 Hb_003029_130--Hb_000935_090 Hb_001178_150 Hb_001178_150 Hb_003029_130--Hb_001178_150 Hb_010925_020 Hb_010925_020 Hb_003029_130--Hb_010925_020 Hb_000475_020--Hb_001811_120 Hb_002471_210 Hb_002471_210 Hb_000475_020--Hb_002471_210 Hb_000250_070 Hb_000250_070 Hb_000475_020--Hb_000250_070 Hb_007849_020 Hb_007849_020 Hb_000475_020--Hb_007849_020 Hb_002291_070 Hb_002291_070 Hb_000475_020--Hb_002291_070 Hb_147737_010 Hb_147737_010 Hb_000475_020--Hb_147737_010 Hb_000504_150--Hb_004970_160 Hb_000504_150--Hb_003029_130 Hb_001196_060 Hb_001196_060 Hb_000504_150--Hb_001196_060 Hb_000504_150--Hb_001811_120 Hb_000347_570 Hb_000347_570 Hb_000504_150--Hb_000347_570 Hb_001811_120--Hb_002471_210 Hb_001811_120--Hb_000250_070 Hb_007904_180 Hb_007904_180 Hb_001811_120--Hb_007904_180 Hb_001811_120--Hb_002291_070 Hb_000120_620 Hb_000120_620 Hb_004970_160--Hb_000120_620 Hb_004899_070 Hb_004899_070 Hb_004970_160--Hb_004899_070 Hb_005462_020 Hb_005462_020 Hb_004970_160--Hb_005462_020 Hb_001028_070 Hb_001028_070 Hb_004970_160--Hb_001028_070 Hb_000594_020 Hb_000594_020 Hb_004970_160--Hb_000594_020 Hb_000120_610 Hb_000120_610 Hb_004970_160--Hb_000120_610 Hb_000209_070--Hb_001473_090 Hb_022250_110 Hb_022250_110 Hb_000209_070--Hb_022250_110 Hb_000160_290 Hb_000160_290 Hb_000209_070--Hb_000160_290 Hb_001675_070 Hb_001675_070 Hb_000209_070--Hb_001675_070 Hb_000029_320 Hb_000029_320 Hb_000209_070--Hb_000029_320 Hb_003464_020 Hb_003464_020 Hb_000209_070--Hb_003464_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
238.959 163.357 87.5414 84.8775 249.114 361.293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
81.2554 31.7368 64.6149 144.493 140.119

CAGE analysis