Hb_000487_230

Information

Type -
Description -
Location Contig487: 223775-225465
Sequence    

Annotation

kegg
ID rcu:RCOM_1575940
description hypothetical protein
nr
ID XP_012087405.1
description PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
swissprot
ID Q9LDD1
description Probable BOI-related E3 ubiquitin-protein ligase 3 OS=Arabidopsis thaliana GN=BRG3 PE=1 SV=1
trembl
ID A0A067JQJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22648 PE=4 SV=1
Gene Ontology
ID GO:0008270
description probable boi-related e3 ubiquitin-protein ligase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45020: 223865-224784 , PASA_asmbl_45021: 224809-225245
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_230 0.0 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
2 Hb_000441_110 0.1280569733 - - PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]
3 Hb_002231_030 0.1295576061 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
4 Hb_000086_230 0.1384586992 - - serine/threonine-protein kinase, putative [Ricinus communis]
5 Hb_000699_090 0.1425071396 - - cyclophilin, putative [Ricinus communis]
6 Hb_010812_040 0.1463005408 transcription factor TF Family: SNF2 PREDICTED: E3 ubiquitin-protein ligase SHPRH [Jatropha curcas]
7 Hb_003992_240 0.1487786211 - - -
8 Hb_002235_080 0.1491319301 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
9 Hb_003638_070 0.1493636731 - - hypothetical protein EUGRSUZ_E00638 [Eucalyptus grandis]
10 Hb_003540_240 0.1503063927 - - PREDICTED: ribosomal RNA-processing protein 17 [Jatropha curcas]
11 Hb_002759_150 0.1519008165 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 22 isoform X1 [Jatropha curcas]
12 Hb_022425_040 0.1526076463 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
13 Hb_007017_010 0.1558815946 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
14 Hb_002811_230 0.1582471186 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
15 Hb_000815_060 0.158282179 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
16 Hb_003038_190 0.1600926211 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105645961 [Jatropha curcas]
17 Hb_000732_130 0.161324661 transcription factor TF Family: HSF hypothetical protein JCGZ_17108 [Jatropha curcas]
18 Hb_000028_100 0.1613570774 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
19 Hb_011671_100 0.1619529932 - - 60S ribosomal protein L15 [Populus trichocarpa]
20 Hb_001691_140 0.162431591 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000487_230 Hb_000487_230 Hb_000441_110 Hb_000441_110 Hb_000487_230--Hb_000441_110 Hb_002231_030 Hb_002231_030 Hb_000487_230--Hb_002231_030 Hb_000086_230 Hb_000086_230 Hb_000487_230--Hb_000086_230 Hb_000699_090 Hb_000699_090 Hb_000487_230--Hb_000699_090 Hb_010812_040 Hb_010812_040 Hb_000487_230--Hb_010812_040 Hb_003992_240 Hb_003992_240 Hb_000487_230--Hb_003992_240 Hb_003540_240 Hb_003540_240 Hb_000441_110--Hb_003540_240 Hb_011671_100 Hb_011671_100 Hb_000441_110--Hb_011671_100 Hb_006478_150 Hb_006478_150 Hb_000441_110--Hb_006478_150 Hb_002056_050 Hb_002056_050 Hb_000441_110--Hb_002056_050 Hb_004567_120 Hb_004567_120 Hb_000441_110--Hb_004567_120 Hb_004453_020 Hb_004453_020 Hb_000441_110--Hb_004453_020 Hb_007044_060 Hb_007044_060 Hb_002231_030--Hb_007044_060 Hb_003044_090 Hb_003044_090 Hb_002231_030--Hb_003044_090 Hb_000997_190 Hb_000997_190 Hb_002231_030--Hb_000997_190 Hb_000906_040 Hb_000906_040 Hb_002231_030--Hb_000906_040 Hb_002231_030--Hb_000699_090 Hb_001691_140 Hb_001691_140 Hb_000086_230--Hb_001691_140 Hb_003064_020 Hb_003064_020 Hb_000086_230--Hb_003064_020 Hb_000084_160 Hb_000084_160 Hb_000086_230--Hb_000084_160 Hb_000099_150 Hb_000099_150 Hb_000086_230--Hb_000099_150 Hb_000589_120 Hb_000589_120 Hb_000086_230--Hb_000589_120 Hb_001828_060 Hb_001828_060 Hb_000086_230--Hb_001828_060 Hb_011236_010 Hb_011236_010 Hb_000699_090--Hb_011236_010 Hb_000699_090--Hb_000906_040 Hb_000577_090 Hb_000577_090 Hb_000699_090--Hb_000577_090 Hb_000265_050 Hb_000265_050 Hb_000699_090--Hb_000265_050 Hb_004223_040 Hb_004223_040 Hb_000699_090--Hb_004223_040 Hb_000574_160 Hb_000574_160 Hb_000699_090--Hb_000574_160 Hb_001860_050 Hb_001860_050 Hb_010812_040--Hb_001860_050 Hb_010812_040--Hb_003540_240 Hb_000046_050 Hb_000046_050 Hb_010812_040--Hb_000046_050 Hb_000300_080 Hb_000300_080 Hb_010812_040--Hb_000300_080 Hb_001513_010 Hb_001513_010 Hb_010812_040--Hb_001513_010 Hb_011609_100 Hb_011609_100 Hb_003992_240--Hb_011609_100 Hb_114893_030 Hb_114893_030 Hb_003992_240--Hb_114893_030 Hb_000788_100 Hb_000788_100 Hb_003992_240--Hb_000788_100 Hb_000012_220 Hb_000012_220 Hb_003992_240--Hb_000012_220 Hb_015279_010 Hb_015279_010 Hb_003992_240--Hb_015279_010 Hb_022425_040 Hb_022425_040 Hb_003992_240--Hb_022425_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.1898 32.908 11.9605 15.4622 26.0259 15.4347
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.4429 107.813 23.722 24.1529 24.2284

CAGE analysis